Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21565

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21555 and AO356_21560 are separated by 106 nucleotidesAO356_21560 and AO356_21565 are separated by 97 nucleotidesAO356_21565 and AO356_21570 are separated by 344 nucleotidesAO356_21570 and AO356_21575 are separated by 219 nucleotides AO356_21555: AO356_21555 - LysR family transcriptional regulator, at 4,828,018 to 4,828,902 _21555 AO356_21560: AO356_21560 - hypothetical protein, at 4,829,009 to 4,829,458 _21560 AO356_21565: AO356_21565 - hypothetical protein, at 4,829,556 to 4,830,539 _21565 AO356_21570: AO356_21570 - hypothetical protein, at 4,830,884 to 4,831,312 _21570 AO356_21575: AO356_21575 - GTP pyrophosphokinase, at 4,831,532 to 4,831,960 _21575 Position (kb) 4829 4830 4831Strain fitness (log2 ratio) -2 -1 0 1at 4828.577 kb on - strand, within AO356_21555at 4828.649 kb on - strand, within AO356_21555at 4828.649 kb on - strand, within AO356_21555at 4828.691 kb on + strand, within AO356_21555at 4828.691 kb on + strand, within AO356_21555at 4828.691 kb on + strand, within AO356_21555at 4828.691 kb on + strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.692 kb on - strand, within AO356_21555at 4828.910 kb on + strandat 4828.941 kb on - strandat 4828.941 kb on - strandat 4829.048 kb on + strandat 4829.049 kb on - strandat 4829.096 kb on + strand, within AO356_21560at 4829.096 kb on + strand, within AO356_21560at 4829.097 kb on - strand, within AO356_21560at 4829.462 kb on - strandat 4829.464 kb on + strandat 4829.465 kb on - strandat 4829.477 kb on + strandat 4829.536 kb on + strandat 4829.536 kb on + strandat 4829.537 kb on - strandat 4829.603 kb on - strandat 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.744 kb on + strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.745 kb on - strand, within AO356_21565at 4829.746 kb on + strand, within AO356_21565at 4829.746 kb on + strand, within AO356_21565at 4829.747 kb on - strand, within AO356_21565at 4829.778 kb on - strand, within AO356_21565at 4829.817 kb on - strand, within AO356_21565at 4829.852 kb on + strand, within AO356_21565at 4829.852 kb on + strand, within AO356_21565at 4829.853 kb on - strand, within AO356_21565at 4829.916 kb on + strand, within AO356_21565at 4829.925 kb on + strand, within AO356_21565at 4829.926 kb on - strand, within AO356_21565at 4830.057 kb on + strand, within AO356_21565at 4830.057 kb on + strand, within AO356_21565at 4830.058 kb on - strand, within AO356_21565at 4830.058 kb on - strand, within AO356_21565at 4830.058 kb on - strand, within AO356_21565at 4830.061 kb on + strand, within AO356_21565at 4830.061 kb on + strand, within AO356_21565at 4830.062 kb on - strand, within AO356_21565at 4830.062 kb on - strand, within AO356_21565at 4830.063 kb on + strand, within AO356_21565at 4830.064 kb on - strand, within AO356_21565at 4830.090 kb on - strand, within AO356_21565at 4830.149 kb on + strand, within AO356_21565at 4830.151 kb on + strand, within AO356_21565at 4830.151 kb on + strand, within AO356_21565at 4830.151 kb on + strand, within AO356_21565at 4830.151 kb on + strand, within AO356_21565at 4830.247 kb on + strand, within AO356_21565at 4830.247 kb on + strand, within AO356_21565at 4830.247 kb on + strand, within AO356_21565at 4830.248 kb on - strand, within AO356_21565at 4830.248 kb on - strand, within AO356_21565at 4830.248 kb on - strand, within AO356_21565at 4830.276 kb on + strand, within AO356_21565at 4830.331 kb on + strand, within AO356_21565at 4830.332 kb on - strand, within AO356_21565at 4830.401 kb on + strand, within AO356_21565at 4830.408 kb on + strand, within AO356_21565at 4830.408 kb on + strand, within AO356_21565at 4830.409 kb on - strand, within AO356_21565at 4830.409 kb on - strand, within AO356_21565at 4830.528 kb on + strandat 4830.585 kb on + strandat 4830.633 kb on + strandat 4830.664 kb on + strandat 4830.668 kb on + strandat 4830.679 kb on + strandat 4830.745 kb on + strandat 4830.767 kb on + strandat 4830.767 kb on + strandat 4830.795 kb on - strandat 4830.945 kb on + strand, within AO356_21570at 4830.945 kb on + strand, within AO356_21570at 4830.946 kb on - strand, within AO356_21570at 4830.946 kb on - strand, within AO356_21570at 4830.951 kb on + strand, within AO356_21570at 4830.952 kb on - strand, within AO356_21570at 4830.969 kb on + strand, within AO356_21570at 4830.969 kb on + strand, within AO356_21570at 4830.969 kb on + strand, within AO356_21570at 4830.969 kb on + strand, within AO356_21570at 4830.969 kb on + strand, within AO356_21570at 4830.970 kb on - strand, within AO356_21570at 4830.970 kb on - strand, within AO356_21570at 4830.970 kb on - strand, within AO356_21570at 4831.122 kb on + strand, within AO356_21570at 4831.123 kb on - strand, within AO356_21570at 4831.123 kb on - strand, within AO356_21570at 4831.123 kb on - strand, within AO356_21570at 4831.126 kb on + strand, within AO356_21570at 4831.127 kb on - strand, within AO356_21570at 4831.127 kb on - strand, within AO356_21570at 4831.127 kb on - strand, within AO356_21570at 4831.209 kb on + strand, within AO356_21570at 4831.233 kb on + strand, within AO356_21570at 4831.233 kb on + strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.276 kb on - strandat 4831.292 kb on + strandat 4831.293 kb on - strandat 4831.338 kb on + strandat 4831.338 kb on + strandat 4831.339 kb on - strandat 4831.339 kb on - strandat 4831.431 kb on + strandat 4831.431 kb on + strandat 4831.431 kb on + strandat 4831.432 kb on - strandat 4831.445 kb on - strandat 4831.515 kb on + strandat 4831.516 kb on - strandat 4831.533 kb on + strandat 4831.533 kb on + strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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4,828,577 - AO356_21555 0.63 -0.2
4,828,649 - AO356_21555 0.71 -0.4
4,828,649 - AO356_21555 0.71 +0.3
4,828,691 + AO356_21555 0.76 +1.1
4,828,691 + AO356_21555 0.76 -0.6
4,828,691 + AO356_21555 0.76 +0.2
4,828,691 + AO356_21555 0.76 +0.1
4,828,692 - AO356_21555 0.76 -1.2
4,828,692 - AO356_21555 0.76 -0.9
4,828,692 - AO356_21555 0.76 +0.1
4,828,692 - AO356_21555 0.76 -0.6
4,828,692 - AO356_21555 0.76 +0.2
4,828,692 - AO356_21555 0.76 -0.5
4,828,692 - AO356_21555 0.76 +0.7
4,828,910 + -0.8
4,828,941 - +0.2
4,828,941 - -0.3
4,829,048 + +0.2
4,829,049 - +0.2
4,829,096 + AO356_21560 0.19 -1.5
4,829,096 + AO356_21560 0.19 -0.6
4,829,097 - AO356_21560 0.20 -1.6
4,829,462 - -0.1
4,829,464 + +0.3
4,829,465 - +0.4
4,829,477 + +0.1
4,829,536 + -0.0
4,829,536 + +0.5
4,829,537 - +0.4
4,829,603 - +1.2
4,829,744 + AO356_21565 0.19 -1.4
4,829,744 + AO356_21565 0.19 +0.8
4,829,744 + AO356_21565 0.19 -0.1
4,829,744 + AO356_21565 0.19 -0.5
4,829,744 + AO356_21565 0.19 +0.1
4,829,744 + AO356_21565 0.19 +0.1
4,829,744 + AO356_21565 0.19 +0.5
4,829,744 + AO356_21565 0.19 -0.4
4,829,744 + AO356_21565 0.19 -0.6
4,829,745 - AO356_21565 0.19 +0.1
4,829,745 - AO356_21565 0.19 -0.0
4,829,745 - AO356_21565 0.19 -2.7
4,829,745 - AO356_21565 0.19 -0.6
4,829,745 - AO356_21565 0.19 -0.6
4,829,745 - AO356_21565 0.19 +0.6
4,829,745 - AO356_21565 0.19 -0.9
4,829,745 - AO356_21565 0.19 -0.3
4,829,745 - AO356_21565 0.19 +0.1
4,829,746 + AO356_21565 0.19 -1.2
4,829,746 + AO356_21565 0.19 -0.4
4,829,747 - AO356_21565 0.19 -0.1
4,829,778 - AO356_21565 0.23 +1.2
4,829,817 - AO356_21565 0.27 -0.1
4,829,852 + AO356_21565 0.30 +0.6
4,829,852 + AO356_21565 0.30 +0.9
4,829,853 - AO356_21565 0.30 +1.1
4,829,916 + AO356_21565 0.37 -1.2
4,829,925 + AO356_21565 0.38 +0.6
4,829,926 - AO356_21565 0.38 +0.5
4,830,057 + AO356_21565 0.51 -0.4
4,830,057 + AO356_21565 0.51 -0.5
4,830,058 - AO356_21565 0.51 -0.2
4,830,058 - AO356_21565 0.51 -0.7
4,830,058 - AO356_21565 0.51 +0.5
4,830,061 + AO356_21565 0.51 -0.7
4,830,061 + AO356_21565 0.51 +0.8
4,830,062 - AO356_21565 0.51 -0.0
4,830,062 - AO356_21565 0.51 -1.8
4,830,063 + AO356_21565 0.52 -0.4
4,830,064 - AO356_21565 0.52 -0.6
4,830,090 - AO356_21565 0.54 -0.3
4,830,149 + AO356_21565 0.60 -0.4
4,830,151 + AO356_21565 0.60 +0.3
4,830,151 + AO356_21565 0.60 +1.5
4,830,151 + AO356_21565 0.60 -0.2
4,830,151 + AO356_21565 0.60 +0.3
4,830,247 + AO356_21565 0.70 +0.2
4,830,247 + AO356_21565 0.70 -0.6
4,830,247 + AO356_21565 0.70 -0.1
4,830,248 - AO356_21565 0.70 -1.3
4,830,248 - AO356_21565 0.70 -0.2
4,830,248 - AO356_21565 0.70 +1.2
4,830,276 + AO356_21565 0.73 +0.5
4,830,331 + AO356_21565 0.79 -0.4
4,830,332 - AO356_21565 0.79 -0.7
4,830,401 + AO356_21565 0.86 +0.2
4,830,408 + AO356_21565 0.87 -1.9
4,830,408 + AO356_21565 0.87 +0.1
4,830,409 - AO356_21565 0.87 +0.2
4,830,409 - AO356_21565 0.87 -0.2
4,830,528 + -1.1
4,830,585 + +0.6
4,830,633 + +0.3
4,830,664 + -2.5
4,830,668 + -0.5
4,830,679 + -0.9
4,830,745 + -0.4
4,830,767 + -0.7
4,830,767 + -0.4
4,830,795 - -2.0
4,830,945 + AO356_21570 0.14 +0.7
4,830,945 + AO356_21570 0.14 -0.0
4,830,946 - AO356_21570 0.14 +1.4
4,830,946 - AO356_21570 0.14 +1.2
4,830,951 + AO356_21570 0.16 -1.5
4,830,952 - AO356_21570 0.16 +0.6
4,830,969 + AO356_21570 0.20 +0.2
4,830,969 + AO356_21570 0.20 +0.7
4,830,969 + AO356_21570 0.20 -0.1
4,830,969 + AO356_21570 0.20 -0.1
4,830,969 + AO356_21570 0.20 +0.4
4,830,970 - AO356_21570 0.20 +0.4
4,830,970 - AO356_21570 0.20 +0.4
4,830,970 - AO356_21570 0.20 +0.5
4,831,122 + AO356_21570 0.55 -0.4
4,831,123 - AO356_21570 0.56 -1.2
4,831,123 - AO356_21570 0.56 -0.4
4,831,123 - AO356_21570 0.56 +0.6
4,831,126 + AO356_21570 0.56 +0.4
4,831,127 - AO356_21570 0.57 -0.4
4,831,127 - AO356_21570 0.57 -0.9
4,831,127 - AO356_21570 0.57 -0.3
4,831,209 + AO356_21570 0.76 +0.5
4,831,233 + AO356_21570 0.81 +1.1
4,831,233 + AO356_21570 0.81 +0.9
4,831,234 - AO356_21570 0.82 +0.6
4,831,234 - AO356_21570 0.82 -0.3
4,831,234 - AO356_21570 0.82 +1.2
4,831,234 - AO356_21570 0.82 +0.4
4,831,276 - +0.3
4,831,292 + +0.2
4,831,293 - -0.7
4,831,338 + +0.3
4,831,338 + -0.0
4,831,339 - +0.3
4,831,339 - +0.5
4,831,431 + -0.4
4,831,431 + +0.6
4,831,431 + +0.2
4,831,432 - +0.7
4,831,445 - -0.5
4,831,515 + -0.2
4,831,516 - +0.1
4,831,533 + -0.4
4,831,533 + -0.4
4,831,534 - -0.1
4,831,534 - +0.3
4,831,534 - +0.4
4,831,534 - -0.6
4,831,534 - -0.0

Or see this region's nucleotide sequence