Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04165 and AO356_04170 are separated by 206 nucleotides AO356_04170 and AO356_04175 are separated by 501 nucleotides AO356_04175 and AO356_04180 are separated by 256 nucleotides AO356_04180 and AO356_04185 are separated by 68 nucleotides
AO356_04165: AO356_04165 - hypothetical protein, at 935,414 to 935,974
_04165
AO356_04170: AO356_04170 - hypothetical protein, at 936,181 to 936,360
_04170
AO356_04175: AO356_04175 - hypothetical protein, at 936,862 to 937,338
_04175
AO356_04180: AO356_04180 - hypothetical protein, at 937,595 to 938,128
_04180
AO356_04185: AO356_04185 - transposase, at 938,197 to 938,898
_04185
Position (kb) 936
937
938 Strain fitness (log2 ratio) -1
0
1
2 at 935.884 kb on - strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 936.262 kb on - strand, within AO356_04170 at 936.927 kb on + strand, within AO356_04175 at 936.928 kb on - strand, within AO356_04175 at 936.968 kb on - strand, within AO356_04175 at 937.023 kb on + strand, within AO356_04175 at 937.050 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.272 kb on + strand, within AO356_04175 at 937.311 kb on + strand at 937.312 kb on - strand at 937.363 kb on - strand at 937.379 kb on - strand at 937.388 kb on + strand at 937.388 kb on + strand at 937.406 kb on + strand at 937.526 kb on + strand at 937.527 kb on - strand at 937.540 kb on - strand at 937.561 kb on + strand at 937.737 kb on - strand, within AO356_04180 at 937.974 kb on - strand, within AO356_04180 at 937.974 kb on - strand, within AO356_04180 at 938.140 kb on + strand at 938.141 kb on - strand at 938.145 kb on + strand at 938.145 kb on + strand at 938.146 kb on - strand at 938.149 kb on - strand at 938.149 kb on - strand at 938.242 kb on + strand at 938.275 kb on + strand, within AO356_04185 at 938.275 kb on + strand, within AO356_04185 at 938.276 kb on - strand, within AO356_04185 at 938.276 kb on - strand, within AO356_04185 at 938.290 kb on - strand, within AO356_04185
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 935,884 - AO356_04165 0.84 -1.0 935,886 + AO356_04165 0.84 -0.5 935,886 + AO356_04165 0.84 -0.7 935,887 - AO356_04165 0.84 +0.6 935,887 - AO356_04165 0.84 -0.1 936,262 - AO356_04170 0.45 +2.1 936,927 + AO356_04175 0.14 -0.1 936,928 - AO356_04175 0.14 +0.0 936,968 - AO356_04175 0.22 -0.6 937,023 + AO356_04175 0.34 +0.1 937,050 + AO356_04175 0.39 -0.1 937,181 + AO356_04175 0.67 -1.0 937,181 + AO356_04175 0.67 -0.1 937,181 + AO356_04175 0.67 -0.2 937,182 - AO356_04175 0.67 +0.1 937,182 - AO356_04175 0.67 -0.3 937,182 - AO356_04175 0.67 +0.1 937,272 + AO356_04175 0.86 -0.1 937,311 + +0.2 937,312 - +0.5 937,363 - -0.9 937,379 - -0.8 937,388 + +0.2 937,388 + +0.2 937,406 + -1.3 937,526 + +0.7 937,527 - -0.2 937,540 - +0.5 937,561 + +0.8 937,737 - AO356_04180 0.27 +0.3 937,974 - AO356_04180 0.71 -0.0 937,974 - AO356_04180 0.71 +0.6 938,140 + -0.1 938,141 - +0.4 938,145 + +0.3 938,145 + +0.4 938,146 - -0.0 938,149 - +0.2 938,149 - +0.6 938,242 + +0.2 938,275 + AO356_04185 0.11 +0.4 938,275 + AO356_04185 0.11 +0.1 938,276 - AO356_04185 0.11 -0.3 938,276 - AO356_04185 0.11 +0.5 938,290 - AO356_04185 0.13 +0.0
Or see this region's nucleotide sequence