Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01425 and AO356_01430 are separated by 13 nucleotides AO356_01430 and AO356_01435 are separated by 142 nucleotides AO356_01435 and AO356_01440 are separated by 98 nucleotides AO356_01440 and AO356_01445 are separated by 76 nucleotides
AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780
_01425
AO356_01430: AO356_01430 - NADP oxidoreductase, at 327,794 to 328,396
_01430
AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468
_01435
AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331
_01440
AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995
_01445
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1 at 327.644 kb on - strand, within AO356_01425 at 327.881 kb on + strand, within AO356_01430 at 327.882 kb on - strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.428 kb on + strand at 328.521 kb on + strand at 328.521 kb on + strand at 328.521 kb on + strand at 328.522 kb on - strand at 328.525 kb on - strand at 328.858 kb on + strand, within AO356_01435 at 329.049 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.358 kb on + strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.533 kb on - strand at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.939 kb on + strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 330.003 kb on + strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 327,644 - AO356_01425 0.85 +0.3 327,881 + AO356_01430 0.14 +0.6 327,882 - AO356_01430 0.15 +0.3 328,316 + AO356_01430 0.87 -0.1 328,316 + AO356_01430 0.87 -0.4 328,316 + AO356_01430 0.87 +0.9 328,317 - AO356_01430 0.87 -0.0 328,317 - AO356_01430 0.87 +0.6 328,317 - AO356_01430 0.87 -0.7 328,428 + +1.4 328,521 + +0.4 328,521 + -0.5 328,521 + +0.0 328,522 - -0.5 328,525 - +0.2 328,858 + AO356_01435 0.34 -0.1 329,049 + AO356_01435 0.55 -0.3 329,328 + AO356_01435 0.85 +0.7 329,328 + AO356_01435 0.85 -0.2 329,328 + AO356_01435 0.85 +0.8 329,328 + AO356_01435 0.85 +0.0 329,329 - AO356_01435 0.85 +0.7 329,329 - AO356_01435 0.85 -0.2 329,329 - AO356_01435 0.85 +0.2 329,356 - AO356_01435 0.88 -0.3 329,356 - AO356_01435 0.88 +0.6 329,358 + AO356_01435 0.88 -0.9 329,359 - AO356_01435 0.88 +0.3 329,359 - AO356_01435 0.88 +0.0 329,533 - -0.5 329,789 + AO356_01440 0.29 -0.9 329,789 + AO356_01440 0.29 -0.8 329,789 + AO356_01440 0.29 +0.1 329,790 - AO356_01440 0.29 -0.6 329,790 - AO356_01440 0.29 -0.4 329,939 + AO356_01440 0.49 +0.1 329,940 - AO356_01440 0.49 -0.8 329,940 - AO356_01440 0.49 +1.2 330,003 + AO356_01440 0.57 -0.3 330,004 - AO356_01440 0.57 +0.4 330,004 - AO356_01440 0.57 -1.0 330,188 + AO356_01440 0.81 -0.1 330,188 + AO356_01440 0.81 +0.8 330,188 + AO356_01440 0.81 +0.7 330,188 + AO356_01440 0.81 +0.9 330,188 + AO356_01440 0.81 +0.4 330,189 - AO356_01440 0.81 -0.2 330,189 - AO356_01440 0.81 -0.5 330,189 - AO356_01440 0.81 +0.0 330,189 - AO356_01440 0.81 -1.2 330,189 - AO356_01440 0.81 +0.3 330,189 - AO356_01440 0.81 -0.5 330,423 - +0.3
Or see this region's nucleotide sequence