Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00820

Experiment: Cytidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00815 and AO356_00820 overlap by 4 nucleotidesAO356_00820 and AO356_00825 are separated by 118 nucleotides AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794 _00815 AO356_00820: AO356_00820 - alcohol dehydrogenase, at 185,791 to 186,831 _00820 AO356_00825: AO356_00825 - hypothetical protein, at 186,950 to 187,189 _00825 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 184.811 kb on + strand, within AO356_00815at 184.811 kb on + strand, within AO356_00815at 184.811 kb on + strand, within AO356_00815at 184.827 kb on + strand, within AO356_00815at 184.897 kb on + strand, within AO356_00815at 184.910 kb on + strand, within AO356_00815at 184.910 kb on + strand, within AO356_00815at 184.911 kb on - strand, within AO356_00815at 184.911 kb on - strand, within AO356_00815at 184.997 kb on + strand, within AO356_00815at 184.998 kb on - strand, within AO356_00815at 184.998 kb on - strand, within AO356_00815at 185.073 kb on - strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.254 kb on - strand, within AO356_00815at 185.374 kb on + strand, within AO356_00815at 185.389 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.439 kb on - strand, within AO356_00815at 185.439 kb on - strand, within AO356_00815at 185.441 kb on + strand, within AO356_00815at 185.444 kb on + strand, within AO356_00815at 185.445 kb on - strand, within AO356_00815at 185.445 kb on - strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.533 kb on + strand, within AO356_00815at 185.708 kb on + strandat 185.714 kb on + strandat 185.715 kb on - strandat 185.724 kb on - strandat 185.724 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.997 kb on + strand, within AO356_00820at 185.997 kb on + strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.076 kb on - strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.100 kb on - strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.145 kb on - strand, within AO356_00820at 186.470 kb on + strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820at 186.816 kb on - strandat 186.934 kb on + strandat 186.934 kb on + strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.951 kb on + strandat 186.952 kb on - strandat 186.952 kb on - strandat 186.952 kb on - strandat 186.953 kb on + strandat 186.953 kb on + strandat 186.954 kb on - strandat 186.959 kb on - strandat 186.973 kb on - strandat 186.990 kb on - strand, within AO356_00825at 187.025 kb on - strand, within AO356_00825at 187.091 kb on - strand, within AO356_00825at 187.092 kb on + strand, within AO356_00825at 187.093 kb on - strand, within AO356_00825at 187.093 kb on - strand, within AO356_00825at 187.149 kb on - strand, within AO356_00825at 187.149 kb on - strand, within AO356_00825at 187.184 kb on + strandat 187.191 kb on + strandat 187.191 kb on + strandat 187.192 kb on - strandat 187.192 kb on - strandat 187.192 kb on - strandat 187.200 kb on + strandat 187.201 kb on - strandat 187.212 kb on + strandat 187.310 kb on + strandat 187.311 kb on - strandat 187.319 kb on + strandat 187.320 kb on - strandat 187.389 kb on - strandat 187.492 kb on + strandat 187.492 kb on + strandat 187.493 kb on - strandat 187.575 kb on + strandat 187.575 kb on + strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.638 kb on + strandat 187.638 kb on + strandat 187.639 kb on - strandat 187.748 kb on - strandat 187.767 kb on + strandat 187.767 kb on + strandat 187.768 kb on - strandat 187.768 kb on - strandat 187.771 kb on + strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.774 kb on + strandat 187.775 kb on - strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.777 kb on - strandat 187.777 kb on - strandat 187.810 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
remove
184,811 + AO356_00815 0.51 +0.0
184,811 + AO356_00815 0.51 +1.0
184,811 + AO356_00815 0.51 -0.1
184,827 + AO356_00815 0.52 -0.4
184,897 + AO356_00815 0.56 +0.8
184,910 + AO356_00815 0.56 +0.7
184,910 + AO356_00815 0.56 +0.8
184,911 - AO356_00815 0.56 +0.4
184,911 - AO356_00815 0.56 -0.0
184,997 + AO356_00815 0.61 -0.3
184,998 - AO356_00815 0.61 +0.9
184,998 - AO356_00815 0.61 -0.8
185,073 - AO356_00815 0.64 +0.4
185,132 + AO356_00815 0.67 -0.6
185,132 + AO356_00815 0.67 -1.8
185,132 + AO356_00815 0.67 +0.5
185,132 + AO356_00815 0.67 -0.3
185,133 - AO356_00815 0.67 +0.5
185,133 - AO356_00815 0.67 -0.4
185,133 - AO356_00815 0.67 -0.2
185,133 - AO356_00815 0.67 -0.5
185,219 + AO356_00815 0.72 -0.3
185,219 + AO356_00815 0.72 +1.0
185,219 + AO356_00815 0.72 +0.7
185,254 - AO356_00815 0.73 -0.8
185,374 + AO356_00815 0.79 -1.0
185,389 + AO356_00815 0.80 -1.3
185,438 + AO356_00815 0.82 +1.2
185,438 + AO356_00815 0.82 -1.5
185,438 + AO356_00815 0.82 -0.0
185,439 - AO356_00815 0.82 +0.8
185,439 - AO356_00815 0.82 +0.4
185,441 + AO356_00815 0.82 +0.1
185,444 + AO356_00815 0.83 +1.0
185,445 - AO356_00815 0.83 -1.3
185,445 - AO356_00815 0.83 -0.8
185,498 + AO356_00815 0.85 -0.5
185,498 + AO356_00815 0.85 +0.5
185,498 + AO356_00815 0.85 +0.8
185,498 + AO356_00815 0.85 -1.0
185,498 + AO356_00815 0.85 +0.5
185,498 + AO356_00815 0.85 +0.1
185,498 + AO356_00815 0.85 -0.5
185,498 + AO356_00815 0.85 -0.5
185,498 + AO356_00815 0.85 +0.2
185,498 + AO356_00815 0.85 +0.1
185,498 + AO356_00815 0.85 -0.4
185,498 + AO356_00815 0.85 -0.3
185,498 + AO356_00815 0.85 +0.1
185,499 - AO356_00815 0.85 -1.6
185,499 - AO356_00815 0.85 +0.3
185,499 - AO356_00815 0.85 -0.1
185,499 - AO356_00815 0.85 -0.8
185,499 - AO356_00815 0.85 +0.6
185,499 - AO356_00815 0.85 +0.2
185,499 - AO356_00815 0.85 -0.6
185,499 - AO356_00815 0.85 -0.4
185,533 + AO356_00815 0.87 -0.2
185,708 + +1.0
185,714 + +0.2
185,715 - +0.1
185,724 - -0.2
185,724 - -0.0
185,881 - +0.2
185,881 - +0.4
185,997 + AO356_00820 0.20 -0.5
185,997 + AO356_00820 0.20 +0.5
185,998 - AO356_00820 0.20 +0.6
185,998 - AO356_00820 0.20 -0.0
186,075 + AO356_00820 0.27 +0.5
186,075 + AO356_00820 0.27 -0.8
186,076 - AO356_00820 0.27 -0.5
186,099 + AO356_00820 0.30 +1.0
186,099 + AO356_00820 0.30 -1.3
186,100 - AO356_00820 0.30 +1.5
186,144 + AO356_00820 0.34 -0.5
186,144 + AO356_00820 0.34 +0.2
186,145 - AO356_00820 0.34 +0.4
186,470 + AO356_00820 0.65 -0.6
186,471 - AO356_00820 0.65 +2.4
186,471 - AO356_00820 0.65 +0.4
186,471 - AO356_00820 0.65 -0.0
186,471 - AO356_00820 0.65 +0.3
186,721 + AO356_00820 0.89 +0.1
186,721 + AO356_00820 0.89 -0.2
186,816 - -1.4
186,934 + -0.5
186,934 + +0.1
186,935 - -0.9
186,935 - -0.7
186,935 - +0.4
186,951 + -0.4
186,952 - -0.1
186,952 - -0.5
186,952 - +0.2
186,953 + -1.1
186,953 + +0.3
186,954 - -0.2
186,959 - +0.7
186,973 - +0.3
186,990 - AO356_00825 0.17 +0.7
187,025 - AO356_00825 0.31 +0.1
187,091 - AO356_00825 0.59 +0.7
187,092 + AO356_00825 0.59 +1.7
187,093 - AO356_00825 0.60 +0.7
187,093 - AO356_00825 0.60 +0.7
187,149 - AO356_00825 0.83 +0.4
187,149 - AO356_00825 0.83 +0.4
187,184 + +0.7
187,191 + -0.8
187,191 + -0.3
187,192 - +0.0
187,192 - +0.2
187,192 - +0.5
187,200 + +0.1
187,201 - +0.0
187,212 + -1.0
187,310 + -1.5
187,311 - -0.3
187,319 + -0.3
187,320 - +0.5
187,389 - +1.1
187,492 + -0.9
187,492 + +0.7
187,493 - +0.5
187,575 + +0.7
187,575 + -0.6
187,576 - +0.2
187,576 - -0.3
187,576 - -0.1
187,576 - +0.6
187,579 + +0.0
187,579 + +0.4
187,579 + -0.0
187,579 + -0.4
187,579 + +0.5
187,580 - -1.1
187,580 - +0.7
187,580 - +0.4
187,580 - +0.1
187,638 + -0.9
187,638 + +2.0
187,639 - +0.7
187,748 - -0.9
187,767 + +0.8
187,767 + -0.4
187,768 - -1.2
187,768 - -0.2
187,771 + +0.9
187,772 - -0.3
187,772 - -0.0
187,772 - +0.4
187,772 - -0.2
187,774 + -0.7
187,775 - -0.0
187,776 + +0.3
187,776 + -0.6
187,776 + -0.5
187,777 - +0.5
187,777 - +1.1
187,810 + +1.8

Or see this region's nucleotide sequence