Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0635 and Dshi_0636 are separated by 198 nucleotides Dshi_0636 and Dshi_0637 overlap by 4 nucleotides Dshi_0637 and Dshi_0638 are separated by 191 nucleotides
Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610
_0635
Dshi_0636: Dshi_0636 - phospholipase/Carboxylesterase (RefSeq), at 635,809 to 636,474
_0636
Dshi_0637: Dshi_0637 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 636,471 to 637,394
_0637
Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542
_0638
Position (kb) 636
637
638 Strain fitness (log2 ratio) -1
0
1
2 at 635.518 kb on - strand at 635.625 kb on - strand at 635.637 kb on + strand at 635.687 kb on + strand at 635.785 kb on + strand at 635.849 kb on - strand at 635.860 kb on + strand at 635.948 kb on - strand, within Dshi_0636 at 635.967 kb on - strand, within Dshi_0636 at 636.014 kb on - strand, within Dshi_0636 at 636.019 kb on + strand, within Dshi_0636 at 636.130 kb on - strand, within Dshi_0636 at 636.258 kb on + strand, within Dshi_0636 at 636.324 kb on + strand, within Dshi_0636 at 636.355 kb on + strand, within Dshi_0636 at 636.637 kb on - strand, within Dshi_0637 at 636.683 kb on - strand, within Dshi_0637 at 636.777 kb on - strand, within Dshi_0637 at 636.892 kb on + strand, within Dshi_0637 at 636.909 kb on + strand, within Dshi_0637 at 636.952 kb on - strand, within Dshi_0637 at 637.010 kb on - strand, within Dshi_0637 at 637.037 kb on + strand, within Dshi_0637 at 637.163 kb on - strand, within Dshi_0637 at 637.184 kb on - strand, within Dshi_0637 at 637.206 kb on + strand, within Dshi_0637 at 637.223 kb on + strand, within Dshi_0637 at 637.250 kb on + strand, within Dshi_0637 at 637.258 kb on + strand, within Dshi_0637 at 637.301 kb on + strand, within Dshi_0637 at 637.309 kb on - strand at 637.410 kb on - strand at 637.450 kb on + strand at 637.727 kb on - strand, within Dshi_0638 at 637.785 kb on + strand, within Dshi_0638 at 637.813 kb on + strand, within Dshi_0638 at 637.815 kb on + strand, within Dshi_0638 at 638.123 kb on - strand, within Dshi_0638 at 638.183 kb on - strand, within Dshi_0638 at 638.233 kb on - strand, within Dshi_0638 at 638.258 kb on - strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.345 kb on - strand, within Dshi_0638 at 638.347 kb on + strand, within Dshi_0638
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 635,518 - -0.3 635,625 - +0.4 635,637 + -0.3 635,687 + +0.6 635,785 + -0.4 635,849 - -1.1 635,860 + -0.6 635,948 - Dshi_0636 0.21 +0.0 635,967 - Dshi_0636 0.24 -0.3 636,014 - Dshi_0636 0.31 +0.5 636,019 + Dshi_0636 0.32 +0.4 636,130 - Dshi_0636 0.48 +1.0 636,258 + Dshi_0636 0.67 -0.0 636,324 + Dshi_0636 0.77 -0.4 636,355 + Dshi_0636 0.82 -0.4 636,637 - Dshi_0637 0.18 +1.6 636,683 - Dshi_0637 0.23 +0.1 636,777 - Dshi_0637 0.33 -0.3 636,892 + Dshi_0637 0.46 +0.0 636,909 + Dshi_0637 0.47 +0.4 636,952 - Dshi_0637 0.52 +1.8 637,010 - Dshi_0637 0.58 +0.3 637,037 + Dshi_0637 0.61 +0.3 637,163 - Dshi_0637 0.75 +0.1 637,184 - Dshi_0637 0.77 +0.5 637,206 + Dshi_0637 0.80 +0.5 637,223 + Dshi_0637 0.81 -0.2 637,250 + Dshi_0637 0.84 +0.4 637,258 + Dshi_0637 0.85 -0.6 637,301 + Dshi_0637 0.90 -0.3 637,309 - -0.2 637,410 - -0.7 637,450 + -0.6 637,727 - Dshi_0638 0.15 -0.3 637,785 + Dshi_0638 0.21 -0.2 637,813 + Dshi_0638 0.24 +0.6 637,815 + Dshi_0638 0.24 -0.6 638,123 - Dshi_0638 0.56 -0.4 638,183 - Dshi_0638 0.62 +0.4 638,233 - Dshi_0638 0.68 +0.2 638,258 - Dshi_0638 0.70 +0.0 638,337 + Dshi_0638 0.78 +0.8 638,337 + Dshi_0638 0.78 +1.0 638,337 + Dshi_0638 0.78 -0.1 638,345 - Dshi_0638 0.79 +0.4 638,347 + Dshi_0638 0.80 +0.5
Or see this region's nucleotide sequence