Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2725

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2723 and DVU2724 overlap by 4 nucleotidesDVU2724 and DVU2725 overlap by 62 nucleotidesDVU2725 and DVU2727 are separated by 171 nucleotidesDVU2727 and DVU2728 are separated by 9 nucleotides DVU2723: DVU2723 - tail protein, putative (TIGR), at 2,827,365 to 2,828,489 DVU2723 DVU2724: DVU2724 - phage baseplate assembly protein V, putative (TIGR), at 2,828,486 to 2,829,112 DVU2724 DVU2725: DVU2725 - membrane protein, putative (TIGR), at 2,829,051 to 2,829,401 DVU2725 DVU2727: DVU2727 - conserved hypothetical protein (TIGR), at 2,829,573 to 2,829,929 DVU2727 DVU2728: DVU2728 - tail protein, putative (TIGR), at 2,829,939 to 2,831,000 DVU2728 Position (kb) 2829 2830Strain fitness (log2 ratio) -1 0 1 2 3at 2828.077 kb on - strand, within DVU2723at 2828.079 kb on - strand, within DVU2723at 2828.107 kb on - strand, within DVU2723at 2828.130 kb on + strand, within DVU2723at 2828.217 kb on - strand, within DVU2723at 2828.258 kb on + strand, within DVU2723at 2828.310 kb on - strand, within DVU2723at 2828.388 kb on - strandat 2828.392 kb on + strandat 2828.415 kb on - strandat 2828.416 kb on + strandat 2828.628 kb on + strand, within DVU2724at 2828.628 kb on + strand, within DVU2724at 2828.647 kb on + strand, within DVU2724at 2828.658 kb on + strand, within DVU2724at 2828.666 kb on - strand, within DVU2724at 2828.683 kb on + strand, within DVU2724at 2828.691 kb on - strand, within DVU2724at 2828.729 kb on - strand, within DVU2724at 2828.814 kb on + strand, within DVU2724at 2828.920 kb on + strand, within DVU2724at 2829.128 kb on + strand, within DVU2725at 2829.596 kb on - strandat 2829.641 kb on - strand, within DVU2727at 2829.670 kb on - strand, within DVU2727at 2829.730 kb on + strand, within DVU2727at 2829.774 kb on + strand, within DVU2727at 2829.782 kb on - strand, within DVU2727at 2829.907 kb on - strandat 2829.907 kb on - strandat 2829.907 kb on - strandat 2829.909 kb on + strandat 2829.917 kb on - strandat 2829.932 kb on - strandat 2829.932 kb on - strandat 2829.959 kb on - strandat 2829.993 kb on + strandat 2830.023 kb on + strandat 2830.031 kb on + strandat 2830.080 kb on - strand, within DVU2728at 2830.091 kb on - strand, within DVU2728at 2830.102 kb on - strand, within DVU2728at 2830.102 kb on - strand, within DVU2728at 2830.158 kb on + strand, within DVU2728at 2830.158 kb on + strand, within DVU2728at 2830.166 kb on - strand, within DVU2728at 2830.212 kb on - strand, within DVU2728at 2830.297 kb on + strand, within DVU2728at 2830.305 kb on - strand, within DVU2728

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
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2,828,077 - DVU2723 0.63 +3.0
2,828,079 - DVU2723 0.63 -0.5
2,828,107 - DVU2723 0.66 -0.2
2,828,130 + DVU2723 0.68 -0.7
2,828,217 - DVU2723 0.76 -0.5
2,828,258 + DVU2723 0.79 -0.3
2,828,310 - DVU2723 0.84 +1.7
2,828,388 - -0.9
2,828,392 + +1.4
2,828,415 - +1.4
2,828,416 + +0.1
2,828,628 + DVU2724 0.23 -0.1
2,828,628 + DVU2724 0.23 +0.2
2,828,647 + DVU2724 0.26 -0.2
2,828,658 + DVU2724 0.27 -0.1
2,828,666 - DVU2724 0.29 -0.2
2,828,683 + DVU2724 0.31 -0.1
2,828,691 - DVU2724 0.33 -0.1
2,828,729 - DVU2724 0.39 +0.7
2,828,814 + DVU2724 0.52 -1.0
2,828,920 + DVU2724 0.69 -0.1
2,829,128 + DVU2725 0.22 -0.4
2,829,596 - -0.6
2,829,641 - DVU2727 0.19 +0.2
2,829,670 - DVU2727 0.27 +0.4
2,829,730 + DVU2727 0.44 +0.3
2,829,774 + DVU2727 0.56 -0.2
2,829,782 - DVU2727 0.59 +0.0
2,829,907 - -0.6
2,829,907 - -0.2
2,829,907 - +0.1
2,829,909 + -0.9
2,829,917 - -0.1
2,829,932 - -0.1
2,829,932 - +0.5
2,829,959 - +0.5
2,829,993 + -0.1
2,830,023 + -0.1
2,830,031 + +1.3
2,830,080 - DVU2728 0.13 +0.9
2,830,091 - DVU2728 0.14 +1.4
2,830,102 - DVU2728 0.15 -0.4
2,830,102 - DVU2728 0.15 +0.4
2,830,158 + DVU2728 0.21 +0.2
2,830,158 + DVU2728 0.21 -0.3
2,830,166 - DVU2728 0.21 -0.2
2,830,212 - DVU2728 0.26 -0.0
2,830,297 + DVU2728 0.34 +0.2
2,830,305 - DVU2728 0.34 +0.4

Or see this region's nucleotide sequence