Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1145 and DVU1146 are separated by 21 nucleotides DVU1146 and DVU1147 are separated by 250 nucleotides DVU1147 and DVU1148 are separated by 1 nucleotides
DVU1145: DVU1145 - hypothetical protein (TIGR), at 1,240,891 to 1,241,031
DVU1145
DVU1146: DVU1146 - transposase, degenerate (TIGR), at 1,241,053 to 1,241,586
DVU1146
DVU1147: DVU1147 - alginate o-acetyltransferase AlgI, putative (TIGR), at 1,241,837 to 1,243,216
DVU1147
DVU1148: DVU1148 - conserved hypothetical protein (TIGR), at 1,243,218 to 1,244,264
DVU1148
Position (kb)
1241
1242
1243
1244 Strain fitness (log2 ratio)
-1
0
1 at 1240.837 kb on + strand at 1240.848 kb on - strand at 1240.862 kb on + strand at 1240.870 kb on - strand at 1240.878 kb on - strand at 1240.932 kb on + strand, within DVU1145 at 1241.140 kb on - strand, within DVU1146 at 1241.174 kb on - strand, within DVU1146 at 1241.258 kb on + strand, within DVU1146 at 1241.294 kb on + strand, within DVU1146 at 1241.294 kb on + strand, within DVU1146 at 1241.319 kb on + strand, within DVU1146 at 1241.319 kb on + strand, within DVU1146 at 1241.319 kb on + strand, within DVU1146 at 1241.442 kb on + strand, within DVU1146 at 1241.490 kb on - strand, within DVU1146 at 1241.494 kb on + strand, within DVU1146 at 1241.571 kb on + strand at 1241.571 kb on + strand at 1241.722 kb on + strand at 1241.778 kb on - strand at 1241.790 kb on + strand at 1241.800 kb on - strand at 1241.823 kb on - strand at 1242.043 kb on - strand, within DVU1147 at 1242.331 kb on + strand, within DVU1147 at 1242.331 kb on + strand, within DVU1147 at 1242.331 kb on + strand, within DVU1147 at 1242.339 kb on - strand, within DVU1147 at 1242.339 kb on - strand, within DVU1147 at 1242.339 kb on - strand, within DVU1147 at 1242.417 kb on - strand, within DVU1147 at 1242.500 kb on - strand, within DVU1147 at 1242.560 kb on + strand, within DVU1147 at 1242.574 kb on - strand, within DVU1147 at 1242.592 kb on + strand, within DVU1147 at 1243.437 kb on - strand, within DVU1148 at 1243.444 kb on - strand, within DVU1148 at 1243.627 kb on + strand, within DVU1148 at 1243.822 kb on + strand, within DVU1148 at 1243.832 kb on + strand, within DVU1148 at 1244.160 kb on + strand at 1244.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM remove 1,240,837 + -0.2 1,240,848 - +0.1 1,240,862 + -0.6 1,240,870 - -0.4 1,240,878 - -0.1 1,240,932 + DVU1145 0.29 -0.0 1,241,140 - DVU1146 0.16 -0.7 1,241,174 - DVU1146 0.23 -1.6 1,241,258 + DVU1146 0.38 -0.3 1,241,294 + DVU1146 0.45 +0.4 1,241,294 + DVU1146 0.45 -0.3 1,241,319 + DVU1146 0.50 -0.2 1,241,319 + DVU1146 0.50 +0.0 1,241,319 + DVU1146 0.50 -0.1 1,241,442 + DVU1146 0.73 -0.8 1,241,490 - DVU1146 0.82 -0.4 1,241,494 + DVU1146 0.83 -0.3 1,241,571 + -0.8 1,241,571 + -0.6 1,241,722 + +0.9 1,241,778 - -0.3 1,241,790 + -0.2 1,241,800 - -0.3 1,241,823 - -0.1 1,242,043 - DVU1147 0.15 -0.5 1,242,331 + DVU1147 0.36 -0.8 1,242,331 + DVU1147 0.36 -0.6 1,242,331 + DVU1147 0.36 -0.5 1,242,339 - DVU1147 0.36 -0.7 1,242,339 - DVU1147 0.36 -0.1 1,242,339 - DVU1147 0.36 -0.6 1,242,417 - DVU1147 0.42 -0.3 1,242,500 - DVU1147 0.48 -0.4 1,242,560 + DVU1147 0.52 -1.7 1,242,574 - DVU1147 0.53 -0.1 1,242,592 + DVU1147 0.55 -0.3 1,243,437 - DVU1148 0.21 +1.3 1,243,444 - DVU1148 0.22 -0.0 1,243,627 + DVU1148 0.39 +0.1 1,243,822 + DVU1148 0.58 +0.7 1,243,832 + DVU1148 0.59 +0.7 1,244,160 + +0.4 1,244,168 - -0.1
Or see this region's nucleotide sequence