Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1147

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1145 and DVU1146 are separated by 21 nucleotidesDVU1146 and DVU1147 are separated by 250 nucleotidesDVU1147 and DVU1148 are separated by 1 nucleotides DVU1145: DVU1145 - hypothetical protein (TIGR), at 1,240,891 to 1,241,031 DVU1145 DVU1146: DVU1146 - transposase, degenerate (TIGR), at 1,241,053 to 1,241,586 DVU1146 DVU1147: DVU1147 - alginate o-acetyltransferase AlgI, putative (TIGR), at 1,241,837 to 1,243,216 DVU1147 DVU1148: DVU1148 - conserved hypothetical protein (TIGR), at 1,243,218 to 1,244,264 DVU1148 Position (kb) 1241 1242 1243 1244Strain fitness (log2 ratio) -1 0 1at 1240.837 kb on + strandat 1240.848 kb on - strandat 1240.862 kb on + strandat 1240.870 kb on - strandat 1240.878 kb on - strandat 1240.932 kb on + strand, within DVU1145at 1241.140 kb on - strand, within DVU1146at 1241.174 kb on - strand, within DVU1146at 1241.258 kb on + strand, within DVU1146at 1241.294 kb on + strand, within DVU1146at 1241.294 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.442 kb on + strand, within DVU1146at 1241.490 kb on - strand, within DVU1146at 1241.494 kb on + strand, within DVU1146at 1241.571 kb on + strandat 1241.571 kb on + strandat 1241.722 kb on + strandat 1241.778 kb on - strandat 1241.790 kb on + strandat 1241.800 kb on - strandat 1241.823 kb on - strandat 1242.043 kb on - strand, within DVU1147at 1242.331 kb on + strand, within DVU1147at 1242.331 kb on + strand, within DVU1147at 1242.331 kb on + strand, within DVU1147at 1242.339 kb on - strand, within DVU1147at 1242.339 kb on - strand, within DVU1147at 1242.339 kb on - strand, within DVU1147at 1242.417 kb on - strand, within DVU1147at 1242.500 kb on - strand, within DVU1147at 1242.560 kb on + strand, within DVU1147at 1242.574 kb on - strand, within DVU1147at 1242.592 kb on + strand, within DVU1147at 1243.437 kb on - strand, within DVU1148at 1243.444 kb on - strand, within DVU1148at 1243.627 kb on + strand, within DVU1148at 1243.822 kb on + strand, within DVU1148at 1243.832 kb on + strand, within DVU1148at 1244.160 kb on + strandat 1244.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
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1,240,837 + -0.2
1,240,848 - +0.1
1,240,862 + -0.6
1,240,870 - -0.4
1,240,878 - -0.1
1,240,932 + DVU1145 0.29 -0.0
1,241,140 - DVU1146 0.16 -0.7
1,241,174 - DVU1146 0.23 -1.6
1,241,258 + DVU1146 0.38 -0.3
1,241,294 + DVU1146 0.45 +0.4
1,241,294 + DVU1146 0.45 -0.3
1,241,319 + DVU1146 0.50 -0.2
1,241,319 + DVU1146 0.50 +0.0
1,241,319 + DVU1146 0.50 -0.1
1,241,442 + DVU1146 0.73 -0.8
1,241,490 - DVU1146 0.82 -0.4
1,241,494 + DVU1146 0.83 -0.3
1,241,571 + -0.8
1,241,571 + -0.6
1,241,722 + +0.9
1,241,778 - -0.3
1,241,790 + -0.2
1,241,800 - -0.3
1,241,823 - -0.1
1,242,043 - DVU1147 0.15 -0.5
1,242,331 + DVU1147 0.36 -0.8
1,242,331 + DVU1147 0.36 -0.6
1,242,331 + DVU1147 0.36 -0.5
1,242,339 - DVU1147 0.36 -0.7
1,242,339 - DVU1147 0.36 -0.1
1,242,339 - DVU1147 0.36 -0.6
1,242,417 - DVU1147 0.42 -0.3
1,242,500 - DVU1147 0.48 -0.4
1,242,560 + DVU1147 0.52 -1.7
1,242,574 - DVU1147 0.53 -0.1
1,242,592 + DVU1147 0.55 -0.3
1,243,437 - DVU1148 0.21 +1.3
1,243,444 - DVU1148 0.22 -0.0
1,243,627 + DVU1148 0.39 +0.1
1,243,822 + DVU1148 0.58 +0.7
1,243,832 + DVU1148 0.59 +0.7
1,244,160 + +0.4
1,244,168 - -0.1

Or see this region's nucleotide sequence