Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1082

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1081 and DVU1082 are separated by 116 nucleotidesDVU1082 and phoB are separated by 173 nucleotidesphoB and pstB-1 are separated by 27 nucleotides DVU1081: DVU1081 - iron-sulfur cluster-binding protein (TIGR), at 1,184,609 to 1,186,228 DVU1081 DVU1082: DVU1082 - 3- 5 exonuclease domain protein (TIGR), at 1,186,345 to 1,186,953 DVU1082 DVU1083: phoB - phosphate regulon transcriptional regulator PhoB (TIGR), at 1,187,127 to 1,187,816 phoB DVU1084: pstB-1 - phosphate ABC transporter, ATP-binding protein (TIGR), at 1,187,844 to 1,188,611 pstB-1 Position (kb) 1186 1187Strain fitness (log2 ratio) -2 -1 0 1 2at 1185.348 kb on - strand, within DVU1081at 1185.355 kb on + strand, within DVU1081at 1185.392 kb on + strand, within DVU1081at 1185.576 kb on + strand, within DVU1081at 1185.591 kb on + strand, within DVU1081at 1185.619 kb on + strand, within DVU1081at 1185.627 kb on - strand, within DVU1081at 1185.707 kb on + strand, within DVU1081at 1185.707 kb on + strand, within DVU1081at 1185.717 kb on - strand, within DVU1081at 1185.738 kb on + strand, within DVU1081at 1185.797 kb on + strand, within DVU1081at 1185.857 kb on + strand, within DVU1081at 1185.933 kb on + strand, within DVU1081at 1185.933 kb on + strand, within DVU1081at 1185.941 kb on - strand, within DVU1081at 1186.018 kb on + strand, within DVU1081at 1186.085 kb on - strandat 1186.487 kb on + strand, within DVU1082at 1186.621 kb on - strand, within DVU1082at 1186.835 kb on + strand, within DVU1082at 1186.843 kb on - strand, within DVU1082at 1186.858 kb on - strand, within DVU1082at 1187.052 kb on + strandat 1187.064 kb on + strandat 1187.118 kb on + strandat 1187.873 kb on + strandat 1187.923 kb on - strand, within pstB-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
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1,185,348 - DVU1081 0.46 -2.2
1,185,355 + DVU1081 0.46 -0.3
1,185,392 + DVU1081 0.48 -0.7
1,185,576 + DVU1081 0.60 -0.3
1,185,591 + DVU1081 0.61 -2.6
1,185,619 + DVU1081 0.62 +0.2
1,185,627 - DVU1081 0.63 -0.2
1,185,707 + DVU1081 0.68 -0.0
1,185,707 + DVU1081 0.68 +0.5
1,185,717 - DVU1081 0.68 -0.8
1,185,738 + DVU1081 0.70 +0.7
1,185,797 + DVU1081 0.73 +0.7
1,185,857 + DVU1081 0.77 +0.1
1,185,933 + DVU1081 0.82 -0.2
1,185,933 + DVU1081 0.82 -0.5
1,185,941 - DVU1081 0.82 -0.3
1,186,018 + DVU1081 0.87 -1.1
1,186,085 - -0.7
1,186,487 + DVU1082 0.23 -0.7
1,186,621 - DVU1082 0.45 -0.7
1,186,835 + DVU1082 0.80 +1.5
1,186,843 - DVU1082 0.82 -0.6
1,186,858 - DVU1082 0.84 -0.7
1,187,052 + -0.1
1,187,064 + +0.4
1,187,118 + +1.8
1,187,873 + -0.2
1,187,923 - pstB-1 DVU1084 0.10 -1.7

Or see this region's nucleotide sequence