Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF24435

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3344 and DORF24435 are separated by 77 nucleotidesDORF24435 and DVU3347 are separated by 312 nucleotidesDVU3347 and DVU3348 overlap by 1 nucleotides DVU3344: DVU3344 - hypothetical protein (TIGR), at 3,517,416 to 3,518,585 DVU3344 DORF24435: DORF24435 - SEED: Sll1863 protein, at 3,518,663 to 3,518,953 DORF24435 DVU3347: DVU3347 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 3,519,266 to 3,519,814 DVU3347 DVU3348: DVU3348 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR), at 3,519,814 to 3,520,596 DVU3348 Position (kb) 3518 3519Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3517.670 kb on + strand, within DVU3344at 3517.670 kb on + strand, within DVU3344at 3517.670 kb on + strand, within DVU3344at 3517.690 kb on - strand, within DVU3344at 3517.754 kb on + strand, within DVU3344at 3517.764 kb on - strand, within DVU3344at 3517.765 kb on + strand, within DVU3344at 3517.788 kb on - strand, within DVU3344at 3517.788 kb on - strand, within DVU3344at 3517.803 kb on + strand, within DVU3344at 3517.806 kb on - strand, within DVU3344at 3517.813 kb on + strand, within DVU3344at 3517.832 kb on + strand, within DVU3344at 3517.832 kb on + strand, within DVU3344at 3517.859 kb on - strand, within DVU3344at 3517.859 kb on - strand, within DVU3344at 3517.862 kb on + strand, within DVU3344at 3517.977 kb on + strand, within DVU3344at 3517.987 kb on + strand, within DVU3344at 3517.992 kb on + strand, within DVU3344at 3518.025 kb on + strand, within DVU3344at 3518.092 kb on + strand, within DVU3344at 3518.136 kb on - strand, within DVU3344at 3518.171 kb on - strand, within DVU3344at 3518.211 kb on + strand, within DVU3344at 3518.224 kb on + strand, within DVU3344at 3518.278 kb on - strand, within DVU3344at 3518.278 kb on - strand, within DVU3344at 3518.332 kb on - strand, within DVU3344at 3518.382 kb on + strand, within DVU3344at 3518.435 kb on + strand, within DVU3344at 3518.506 kb on + strandat 3518.550 kb on + strandat 3518.573 kb on + strandat 3518.581 kb on - strandat 3518.605 kb on - strandat 3518.639 kb on - strandat 3518.669 kb on + strandat 3518.720 kb on - strand, within DORF24435at 3518.853 kb on + strand, within DORF24435at 3518.853 kb on + strand, within DORF24435at 3518.982 kb on - strandat 3519.057 kb on - strandat 3519.107 kb on + strandat 3519.129 kb on + strandat 3519.191 kb on - strandat 3519.225 kb on - strandat 3519.249 kb on + strandat 3519.249 kb on + strandat 3519.257 kb on - strandat 3519.257 kb on - strandat 3519.561 kb on + strand, within DVU3347at 3519.842 kb on + strandat 3519.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
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3,517,670 + DVU3344 0.22 -0.4
3,517,670 + DVU3344 0.22 -0.4
3,517,670 + DVU3344 0.22 -0.4
3,517,690 - DVU3344 0.23 +0.9
3,517,754 + DVU3344 0.29 +0.5
3,517,764 - DVU3344 0.30 +0.5
3,517,765 + DVU3344 0.30 -0.8
3,517,788 - DVU3344 0.32 -0.3
3,517,788 - DVU3344 0.32 -0.1
3,517,803 + DVU3344 0.33 -0.3
3,517,806 - DVU3344 0.33 -0.0
3,517,813 + DVU3344 0.34 +0.5
3,517,832 + DVU3344 0.36 -0.3
3,517,832 + DVU3344 0.36 -0.6
3,517,859 - DVU3344 0.38 -1.5
3,517,859 - DVU3344 0.38 -0.6
3,517,862 + DVU3344 0.38 -0.4
3,517,977 + DVU3344 0.48 -0.3
3,517,987 + DVU3344 0.49 -0.2
3,517,992 + DVU3344 0.49 -0.0
3,518,025 + DVU3344 0.52 -0.4
3,518,092 + DVU3344 0.58 +2.2
3,518,136 - DVU3344 0.62 -0.7
3,518,171 - DVU3344 0.65 -0.8
3,518,211 + DVU3344 0.68 +0.5
3,518,224 + DVU3344 0.69 -0.1
3,518,278 - DVU3344 0.74 -0.2
3,518,278 - DVU3344 0.74 +1.0
3,518,332 - DVU3344 0.78 -0.5
3,518,382 + DVU3344 0.83 -0.4
3,518,435 + DVU3344 0.87 +3.1
3,518,506 + +0.0
3,518,550 + -0.0
3,518,573 + +0.5
3,518,581 - -0.4
3,518,605 - -0.3
3,518,639 - -1.4
3,518,669 + -1.8
3,518,720 - DORF24435 0.20 -0.8
3,518,853 + DORF24435 0.65 -0.5
3,518,853 + DORF24435 0.65 -0.4
3,518,982 - -0.3
3,519,057 - -0.3
3,519,107 + +0.2
3,519,129 + -0.7
3,519,191 - -0.3
3,519,225 - -0.8
3,519,249 + -0.3
3,519,249 + -0.6
3,519,257 - +1.2
3,519,257 - +0.2
3,519,561 + DVU3347 0.54 -0.0
3,519,842 + +0.2
3,519,850 - -0.5

Or see this region's nucleotide sequence