Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF37060

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1737 and DORF13021 are separated by 2 nucleotidesDORF13021 and DVU1738 overlap by 23 nucleotidesDVU1738 and DORF37060 are separated by 83 nucleotidesDORF37060 and DVU1740 are separated by 14 nucleotidesDVU1740 and DVU1741 overlap by 4 nucleotides DVU1737: DVU1737 - conserved hypothetical protein (TIGR), at 1,806,390 to 1,806,608 DVU1737 DORF13021: DORF13021 - no description, at 1,806,611 to 1,806,808 DORF13021 DVU1738: DVU1738 - site-specific recombinase, phage integrase family (TIGR), at 1,806,786 to 1,807,430 DVU1738 DORF37060: DORF37060 - no description, at 1,807,514 to 1,808,563 DORF37060 DVU1740: DVU1740 - hypothetical protein (TIGR), at 1,808,578 to 1,808,979 DVU1740 DVU1741: DVU1741 - hypothetical protein (TIGR), at 1,808,976 to 1,809,947 DVU1741 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -2 -1 0 1at 1806.558 kb on - strand, within DVU1737at 1806.583 kb on - strand, within DVU1737at 1806.587 kb on - strandat 1806.659 kb on + strand, within DORF13021at 1806.784 kb on + strand, within DORF13021at 1806.790 kb on - strandat 1806.912 kb on - strand, within DVU1738at 1806.924 kb on + strand, within DVU1738at 1806.927 kb on + strand, within DVU1738at 1806.966 kb on + strand, within DVU1738at 1806.988 kb on + strand, within DVU1738at 1806.989 kb on - strand, within DVU1738at 1806.996 kb on - strand, within DVU1738at 1806.998 kb on + strand, within DVU1738at 1807.000 kb on + strand, within DVU1738at 1807.006 kb on - strand, within DVU1738at 1807.006 kb on - strand, within DVU1738at 1807.006 kb on - strand, within DVU1738at 1807.121 kb on + strand, within DVU1738at 1807.256 kb on + strand, within DVU1738at 1807.256 kb on + strand, within DVU1738at 1807.264 kb on - strand, within DVU1738at 1807.264 kb on - strand, within DVU1738at 1807.319 kb on - strand, within DVU1738at 1807.520 kb on - strandat 1807.683 kb on - strand, within DORF37060at 1807.733 kb on - strand, within DORF37060at 1807.742 kb on - strand, within DORF37060at 1807.777 kb on + strand, within DORF37060at 1808.225 kb on - strand, within DORF37060at 1808.294 kb on + strand, within DORF37060at 1808.356 kb on - strand, within DORF37060at 1808.361 kb on - strand, within DORF37060at 1808.414 kb on - strand, within DORF37060at 1808.425 kb on - strand, within DORF37060at 1808.470 kb on + strandat 1808.558 kb on + strandat 1808.608 kb on + strandat 1808.608 kb on + strandat 1808.613 kb on + strandat 1808.788 kb on - strand, within DVU1740at 1808.798 kb on + strand, within DVU1740at 1808.812 kb on - strand, within DVU1740at 1808.844 kb on - strand, within DVU1740at 1808.844 kb on - strand, within DVU1740at 1808.863 kb on + strand, within DVU1740at 1808.906 kb on + strand, within DVU1740at 1808.911 kb on + strand, within DVU1740at 1808.929 kb on - strand, within DVU1740at 1808.934 kb on - strand, within DVU1740at 1808.964 kb on + strandat 1809.160 kb on - strand, within DVU1741at 1809.187 kb on - strand, within DVU1741at 1809.204 kb on + strand, within DVU1741at 1809.212 kb on - strand, within DVU1741at 1809.241 kb on - strand, within DVU1741at 1809.322 kb on + strand, within DVU1741at 1809.332 kb on + strand, within DVU1741at 1809.341 kb on + strand, within DVU1741at 1809.350 kb on + strand, within DVU1741at 1809.369 kb on + strand, within DVU1741at 1809.386 kb on + strand, within DVU1741at 1809.399 kb on - strand, within DVU1741at 1809.419 kb on + strand, within DVU1741at 1809.427 kb on - strand, within DVU1741at 1809.454 kb on + strand, within DVU1741at 1809.454 kb on + strand, within DVU1741at 1809.475 kb on - strand, within DVU1741at 1809.551 kb on - strand, within DVU1741

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
remove
1,806,558 - DVU1737 0.77 -0.3
1,806,583 - DVU1737 0.88 -0.1
1,806,587 - -0.6
1,806,659 + DORF13021 0.24 -0.3
1,806,784 + DORF13021 0.87 +0.4
1,806,790 - -1.2
1,806,912 - DVU1738 0.20 -0.1
1,806,924 + DVU1738 0.21 -0.4
1,806,927 + DVU1738 0.22 -0.3
1,806,966 + DVU1738 0.28 -0.8
1,806,988 + DVU1738 0.31 -0.0
1,806,989 - DVU1738 0.31 +0.0
1,806,996 - DVU1738 0.33 -0.4
1,806,998 + DVU1738 0.33 -1.4
1,807,000 + DVU1738 0.33 +0.3
1,807,006 - DVU1738 0.34 -2.0
1,807,006 - DVU1738 0.34 -0.3
1,807,006 - DVU1738 0.34 -0.2
1,807,121 + DVU1738 0.52 -0.4
1,807,256 + DVU1738 0.73 -0.8
1,807,256 + DVU1738 0.73 -0.2
1,807,264 - DVU1738 0.74 -0.2
1,807,264 - DVU1738 0.74 -0.2
1,807,319 - DVU1738 0.83 +0.8
1,807,520 - -0.5
1,807,683 - DORF37060 0.16 -0.6
1,807,733 - DORF37060 0.21 +0.5
1,807,742 - DORF37060 0.22 -0.4
1,807,777 + DORF37060 0.25 -0.3
1,808,225 - DORF37060 0.68 +0.2
1,808,294 + DORF37060 0.74 -0.4
1,808,356 - DORF37060 0.80 -0.4
1,808,361 - DORF37060 0.81 -1.0
1,808,414 - DORF37060 0.86 +0.2
1,808,425 - DORF37060 0.87 -0.5
1,808,470 + +0.1
1,808,558 + +0.2
1,808,608 + +0.2
1,808,608 + +0.7
1,808,613 + +0.8
1,808,788 - DVU1740 0.52 -0.4
1,808,798 + DVU1740 0.55 +1.3
1,808,812 - DVU1740 0.58 +0.6
1,808,844 - DVU1740 0.66 -0.1
1,808,844 - DVU1740 0.66 -0.5
1,808,863 + DVU1740 0.71 +0.0
1,808,906 + DVU1740 0.82 -1.3
1,808,911 + DVU1740 0.83 -0.3
1,808,929 - DVU1740 0.87 -0.4
1,808,934 - DVU1740 0.89 -0.2
1,808,964 + -1.4
1,809,160 - DVU1741 0.19 +1.2
1,809,187 - DVU1741 0.22 +1.2
1,809,204 + DVU1741 0.23 -0.6
1,809,212 - DVU1741 0.24 +0.3
1,809,241 - DVU1741 0.27 -0.1
1,809,322 + DVU1741 0.36 -0.2
1,809,332 + DVU1741 0.37 +0.6
1,809,341 + DVU1741 0.38 -0.5
1,809,350 + DVU1741 0.38 -0.3
1,809,369 + DVU1741 0.40 +0.3
1,809,386 + DVU1741 0.42 +0.1
1,809,399 - DVU1741 0.44 -0.3
1,809,419 + DVU1741 0.46 -0.5
1,809,427 - DVU1741 0.46 -0.3
1,809,454 + DVU1741 0.49 -0.1
1,809,454 + DVU1741 0.49 -0.4
1,809,475 - DVU1741 0.51 +1.6
1,809,551 - DVU1741 0.59 +0.1

Or see this region's nucleotide sequence