Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF10279

Experiment: MoYLS4 no iron with 2,2' dipyridyl 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1267 and DVU1268 overlap by 4 nucleotidesDVU1268 and DORF10279 are separated by 152 nucleotidesDORF10279 and pilT-1 are separated by 31 nucleotides DVU1267: DVU1267 - hypothetical protein (TIGR), at 1,357,839 to 1,358,522 DVU1267 DVU1268: DVU1268 - hypothetical protein (TIGR), at 1,358,519 to 1,358,932 DVU1268 DORF10279: DORF10279 - no description, at 1,359,085 to 1,359,201 DORF10279 DVU1270: pilT-1 - twitching motility protein (TIGR), at 1,359,233 to 1,360,513 pilT-1 Position (kb) 1359 1360Strain fitness (log2 ratio) -1 0 1 2at 1358.242 kb on - strand, within DVU1267at 1358.242 kb on - strand, within DVU1267at 1358.242 kb on - strand, within DVU1267at 1358.345 kb on - strand, within DVU1267at 1358.354 kb on + strand, within DVU1267at 1358.409 kb on - strand, within DVU1267at 1358.430 kb on - strand, within DVU1267at 1358.491 kb on - strandat 1358.496 kb on - strandat 1358.530 kb on + strandat 1358.591 kb on + strand, within DVU1268at 1358.655 kb on - strand, within DVU1268at 1358.683 kb on - strand, within DVU1268at 1358.688 kb on + strand, within DVU1268at 1358.729 kb on + strand, within DVU1268at 1358.738 kb on + strand, within DVU1268at 1358.756 kb on + strand, within DVU1268at 1358.803 kb on + strand, within DVU1268at 1359.099 kb on + strand, within DORF10279at 1359.107 kb on - strand, within DORF10279at 1359.107 kb on - strand, within DORF10279at 1359.107 kb on - strand, within DORF10279at 1359.107 kb on - strand, within DORF10279at 1359.107 kb on - strand, within DORF10279at 1359.172 kb on - strand, within DORF10279at 1359.196 kb on + strandat 1359.196 kb on + strandat 1359.204 kb on - strandat 1359.307 kb on + strandat 1359.328 kb on + strandat 1359.339 kb on + strandat 1359.438 kb on - strand, within pilT-1at 1359.481 kb on + strand, within pilT-1at 1359.662 kb on + strand, within pilT-1at 1359.761 kb on + strand, within pilT-1at 1359.776 kb on + strand, within pilT-1at 1359.791 kb on - strand, within pilT-1at 1359.791 kb on - strand, within pilT-1at 1359.802 kb on + strand, within pilT-1at 1359.837 kb on + strand, within pilT-1at 1359.868 kb on + strand, within pilT-1at 1360.031 kb on - strand, within pilT-1at 1360.055 kb on - strand, within pilT-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 no iron with 2,2' dipyridyl 20uM
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1,358,242 - DVU1267 0.59 -0.1
1,358,242 - DVU1267 0.59 +0.1
1,358,242 - DVU1267 0.59 -0.3
1,358,345 - DVU1267 0.74 +0.1
1,358,354 + DVU1267 0.75 +1.7
1,358,409 - DVU1267 0.83 +0.1
1,358,430 - DVU1267 0.86 +0.8
1,358,491 - +0.1
1,358,496 - +0.2
1,358,530 + -0.5
1,358,591 + DVU1268 0.17 -0.2
1,358,655 - DVU1268 0.33 -0.0
1,358,683 - DVU1268 0.40 -0.1
1,358,688 + DVU1268 0.41 +0.1
1,358,729 + DVU1268 0.51 +0.1
1,358,738 + DVU1268 0.53 +0.3
1,358,756 + DVU1268 0.57 -0.8
1,358,803 + DVU1268 0.69 +0.1
1,359,099 + DORF10279 0.12 -0.4
1,359,107 - DORF10279 0.19 +1.2
1,359,107 - DORF10279 0.19 +0.8
1,359,107 - DORF10279 0.19 -0.3
1,359,107 - DORF10279 0.19 -1.3
1,359,107 - DORF10279 0.19 -0.3
1,359,172 - DORF10279 0.74 -0.6
1,359,196 + +0.1
1,359,196 + +0.6
1,359,204 - -0.3
1,359,307 + -0.7
1,359,328 + +0.1
1,359,339 + -0.4
1,359,438 - pilT-1 DVU1270 0.16 -1.0
1,359,481 + pilT-1 DVU1270 0.19 -0.2
1,359,662 + pilT-1 DVU1270 0.33 -0.5
1,359,761 + pilT-1 DVU1270 0.41 -0.5
1,359,776 + pilT-1 DVU1270 0.42 -0.8
1,359,791 - pilT-1 DVU1270 0.44 +2.2
1,359,791 - pilT-1 DVU1270 0.44 -0.5
1,359,802 + pilT-1 DVU1270 0.44 -0.8
1,359,837 + pilT-1 DVU1270 0.47 -0.4
1,359,868 + pilT-1 DVU1270 0.50 -0.3
1,360,031 - pilT-1 DVU1270 0.62 -1.3
1,360,055 - pilT-1 DVU1270 0.64 -0.3

Or see this region's nucleotide sequence