Experiment: sodium iodate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_779 and Pf6N2E2_780 are separated by 342 nucleotides Pf6N2E2_780 and Pf6N2E2_781 are separated by 335 nucleotides
Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885
_779
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Pf6N2E2_781 - Outer membrane autotransporter barrel, at 892,555 to 894,657
_781
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.818 kb on + strand at 889.959 kb on + strand at 889.998 kb on + strand at 890.055 kb on + strand at 890.093 kb on - strand at 890.126 kb on - strand at 890.126 kb on - strand at 890.269 kb on + strand at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.501 kb on + strand, within Pf6N2E2_780 at 890.502 kb on - strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.622 kb on - strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.694 kb on - strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.726 kb on - strand, within Pf6N2E2_780 at 890.758 kb on + strand, within Pf6N2E2_780 at 890.793 kb on - strand, within Pf6N2E2_780 at 890.875 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.967 kb on - strand, within Pf6N2E2_780 at 890.967 kb on - strand, within Pf6N2E2_780 at 891.012 kb on + strand, within Pf6N2E2_780 at 891.147 kb on - strand, within Pf6N2E2_780 at 891.170 kb on + strand, within Pf6N2E2_780 at 891.171 kb on - strand, within Pf6N2E2_780 at 891.272 kb on + strand, within Pf6N2E2_780 at 891.295 kb on + strand, within Pf6N2E2_780 at 891.299 kb on - strand at 891.306 kb on + strand, within Pf6N2E2_780 at 891.306 kb on + strand, within Pf6N2E2_780 at 891.503 kb on - strand, within Pf6N2E2_780 at 891.526 kb on + strand, within Pf6N2E2_780 at 891.526 kb on + strand, within Pf6N2E2_780 at 891.527 kb on - strand, within Pf6N2E2_780 at 891.527 kb on - strand, within Pf6N2E2_780 at 891.534 kb on - strand, within Pf6N2E2_780 at 891.569 kb on + strand, within Pf6N2E2_780 at 891.663 kb on - strand, within Pf6N2E2_780 at 891.811 kb on - strand, within Pf6N2E2_780 at 891.842 kb on + strand, within Pf6N2E2_780 at 891.843 kb on - strand, within Pf6N2E2_780 at 891.855 kb on - strand, within Pf6N2E2_780 at 891.883 kb on - strand, within Pf6N2E2_780 at 891.896 kb on + strand, within Pf6N2E2_780 at 892.044 kb on + strand at 892.052 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.125 kb on - strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.138 kb on - strand at 892.138 kb on - strand at 892.153 kb on + strand at 892.153 kb on + strand at 892.191 kb on + strand at 892.191 kb on + strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.232 kb on - strand at 892.280 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.332 kb on - strand at 892.332 kb on - strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.336 kb on - strand at 892.349 kb on + strand at 892.356 kb on + strand at 892.371 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.375 kb on - strand at 892.375 kb on - strand at 892.420 kb on + strand at 892.451 kb on + strand at 892.452 kb on - strand at 892.475 kb on + strand at 892.482 kb on + strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.484 kb on + strand at 892.521 kb on + strand at 892.551 kb on + strand at 892.552 kb on - strand at 892.552 kb on - strand at 892.603 kb on + strand at 892.617 kb on + strand at 892.688 kb on + strand at 892.689 kb on - strand at 892.689 kb on - strand at 892.740 kb on + strand at 892.743 kb on + strand at 892.743 kb on + strand at 892.744 kb on - strand at 892.744 kb on - strand at 892.785 kb on + strand, within Pf6N2E2_781 at 892.787 kb on + strand, within Pf6N2E2_781 at 893.019 kb on + strand, within Pf6N2E2_781 at 893.052 kb on - strand, within Pf6N2E2_781 at 893.196 kb on + strand, within Pf6N2E2_781 at 893.197 kb on - strand, within Pf6N2E2_781
Per-strain Table
Position Strand Gene LocusTag Fraction sodium iodate 0.005 M remove 889,414 - Pf6N2E2_779 0.60 -0.2 889,414 - Pf6N2E2_779 0.60 +0.6 889,764 + Pf6N2E2_779 0.90 -0.1 889,764 + Pf6N2E2_779 0.90 -0.9 889,818 + -0.1 889,959 + -0.1 889,998 + -0.5 890,055 + +1.0 890,093 - +0.2 890,126 - +0.1 890,126 - +0.6 890,269 + +1.3 890,459 + Pf6N2E2_780 0.12 +1.2 890,459 + Pf6N2E2_780 0.12 -0.6 890,459 + Pf6N2E2_780 0.12 +0.9 890,460 - Pf6N2E2_780 0.12 +1.5 890,460 - Pf6N2E2_780 0.12 -0.1 890,460 - Pf6N2E2_780 0.12 -0.3 890,501 + Pf6N2E2_780 0.14 -3.0 890,502 - Pf6N2E2_780 0.14 +0.7 890,608 + Pf6N2E2_780 0.19 -1.1 890,608 + Pf6N2E2_780 0.19 +2.8 890,622 - Pf6N2E2_780 0.20 +0.9 890,693 + Pf6N2E2_780 0.23 +2.3 890,693 + Pf6N2E2_780 0.23 +0.7 890,693 + Pf6N2E2_780 0.23 -1.6 890,693 + Pf6N2E2_780 0.23 +0.3 890,693 + Pf6N2E2_780 0.23 +0.9 890,694 - Pf6N2E2_780 0.23 +0.1 890,725 + Pf6N2E2_780 0.25 +1.0 890,725 + Pf6N2E2_780 0.25 +1.5 890,725 + Pf6N2E2_780 0.25 +1.2 890,726 - Pf6N2E2_780 0.25 -1.0 890,758 + Pf6N2E2_780 0.27 +1.2 890,793 - Pf6N2E2_780 0.28 +3.5 890,875 + Pf6N2E2_780 0.32 -0.4 890,957 + Pf6N2E2_780 0.37 +2.0 890,957 + Pf6N2E2_780 0.37 +0.5 890,957 + Pf6N2E2_780 0.37 -0.8 890,966 + Pf6N2E2_780 0.37 +0.3 890,966 + Pf6N2E2_780 0.37 -0.9 890,966 + Pf6N2E2_780 0.37 +0.9 890,967 - Pf6N2E2_780 0.37 +0.4 890,967 - Pf6N2E2_780 0.37 -0.9 891,012 + Pf6N2E2_780 0.39 +0.4 891,147 - Pf6N2E2_780 0.46 -0.2 891,170 + Pf6N2E2_780 0.47 +1.9 891,171 - Pf6N2E2_780 0.47 -0.4 891,272 + Pf6N2E2_780 0.52 +0.6 891,295 + Pf6N2E2_780 0.54 -1.0 891,299 - -1.1 891,306 + Pf6N2E2_780 0.54 +0.5 891,306 + Pf6N2E2_780 0.54 +0.9 891,503 - Pf6N2E2_780 0.64 -0.1 891,526 + Pf6N2E2_780 0.65 +1.0 891,526 + Pf6N2E2_780 0.65 -0.4 891,527 - Pf6N2E2_780 0.65 +2.0 891,527 - Pf6N2E2_780 0.65 -1.6 891,534 - Pf6N2E2_780 0.66 -1.7 891,569 + Pf6N2E2_780 0.67 +0.4 891,663 - Pf6N2E2_780 0.72 -0.2 891,811 - Pf6N2E2_780 0.79 +0.3 891,842 + Pf6N2E2_780 0.81 +1.2 891,843 - Pf6N2E2_780 0.81 +1.9 891,855 - Pf6N2E2_780 0.82 +1.1 891,883 - Pf6N2E2_780 0.83 -1.6 891,896 + Pf6N2E2_780 0.84 -0.9 892,044 + +0.1 892,052 + -1.7 892,076 + +0.9 892,076 + -0.6 892,076 + -0.9 892,076 + +0.7 892,076 + -0.5 892,076 + +0.5 892,076 + -0.7 892,076 + +0.7 892,076 + +1.0 892,076 + +0.4 892,076 + +1.7 892,076 + +0.5 892,077 - +0.3 892,077 - -3.2 892,077 - +1.2 892,077 - -0.1 892,077 - -0.7 892,124 + +1.0 892,124 + +1.0 892,124 + +0.5 892,125 - -0.4 892,130 + -0.1 892,130 + -1.8 892,130 + -0.4 892,130 + -2.5 892,131 - -1.3 892,131 - +1.9 892,131 - +0.5 892,131 - +4.2 892,131 - +0.3 892,137 + +0.5 892,137 + -0.9 892,137 + +2.6 892,137 + +0.2 892,137 + +0.4 892,137 + +0.9 892,138 - +0.3 892,138 - +0.9 892,153 + -2.1 892,153 + -0.9 892,191 + +1.3 892,191 + +1.0 892,192 - -0.1 892,192 - -0.1 892,192 - +0.7 892,232 - +1.2 892,280 + -1.1 892,331 + -0.7 892,331 + +1.9 892,331 + +0.5 892,331 + -0.6 892,332 - -0.1 892,332 - -0.1 892,335 + -1.4 892,335 + +0.9 892,335 + -0.3 892,336 - -0.4 892,349 + -0.3 892,356 + -1.7 892,371 + -1.4 892,374 + +0.9 892,374 + -0.3 892,374 + +0.2 892,375 - +1.9 892,375 - +1.2 892,420 + -0.4 892,451 + +0.0 892,452 - +0.0 892,475 + +0.9 892,482 + -0.6 892,483 - -1.4 892,483 - +1.3 892,483 - +0.2 892,484 + +1.1 892,521 + +0.1 892,551 + +1.7 892,552 - +2.2 892,552 - +0.1 892,603 + -1.7 892,617 + -0.2 892,688 + +0.9 892,689 - +0.7 892,689 - +0.2 892,740 + -0.9 892,743 + -0.3 892,743 + +1.1 892,744 - +1.9 892,744 - +1.1 892,785 + Pf6N2E2_781 0.11 -1.9 892,787 + Pf6N2E2_781 0.11 -0.7 893,019 + Pf6N2E2_781 0.22 -0.4 893,052 - Pf6N2E2_781 0.24 +0.4 893,196 + Pf6N2E2_781 0.30 -2.3 893,197 - Pf6N2E2_781 0.31 -2.1
Or see this region's nucleotide sequence