Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6130

Experiment: sodium iodate 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4034 and Pf6N2E2_6130 are separated by 172 nucleotidesPf6N2E2_6130 and Pf6N2E2_6131 are separated by 103 nucleotidesPf6N2E2_6131 and Pf6N2E2_6132 are separated by 167 nucleotides Pf6N2E2_4034 - NADH:ubiquinone oxidoreductase subunit 2 (chain N), at 4,708,736 to 4,709,374 _4034 Pf6N2E2_6130 - 5S RNA, at 4,709,547 to 4,709,666 _6130 Pf6N2E2_6131 - 5S RNA, at 4,709,770 to 4,709,889 _6131 Pf6N2E2_6132 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 4,710,057 to 4,712,948 _6132 Position (kb) 4709 4710Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4708.556 kb on + strandat 4708.556 kb on + strandat 4708.556 kb on + strandat 4708.557 kb on - strandat 4708.557 kb on - strandat 4708.557 kb on - strandat 4708.557 kb on - strandat 4708.570 kb on + strandat 4708.571 kb on - strandat 4708.571 kb on - strandat 4708.571 kb on - strandat 4708.571 kb on - strandat 4708.682 kb on + strandat 4708.703 kb on + strandat 4708.704 kb on - strandat 4708.712 kb on - strandat 4708.737 kb on + strandat 4708.737 kb on + strandat 4708.803 kb on + strand, within Pf6N2E2_4034at 4708.803 kb on + strand, within Pf6N2E2_4034at 4708.804 kb on - strand, within Pf6N2E2_4034at 4709.074 kb on - strand, within Pf6N2E2_4034at 4709.074 kb on - strand, within Pf6N2E2_4034at 4709.155 kb on + strand, within Pf6N2E2_4034at 4709.155 kb on + strand, within Pf6N2E2_4034at 4709.155 kb on + strand, within Pf6N2E2_4034at 4709.155 kb on + strand, within Pf6N2E2_4034at 4709.155 kb on + strand, within Pf6N2E2_4034at 4709.156 kb on - strand, within Pf6N2E2_4034at 4709.156 kb on - strand, within Pf6N2E2_4034at 4709.156 kb on - strand, within Pf6N2E2_4034at 4709.301 kb on + strand, within Pf6N2E2_4034at 4709.301 kb on + strand, within Pf6N2E2_4034at 4709.301 kb on + strand, within Pf6N2E2_4034at 4709.301 kb on + strand, within Pf6N2E2_4034at 4709.302 kb on - strand, within Pf6N2E2_4034at 4709.302 kb on - strand, within Pf6N2E2_4034at 4709.307 kb on + strand, within Pf6N2E2_4034at 4709.307 kb on + strand, within Pf6N2E2_4034at 4709.307 kb on + strand, within Pf6N2E2_4034at 4709.308 kb on - strand, within Pf6N2E2_4034at 4709.308 kb on - strand, within Pf6N2E2_4034at 4709.308 kb on - strand, within Pf6N2E2_4034at 4709.430 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.440 kb on + strandat 4709.441 kb on - strandat 4709.441 kb on - strandat 4709.441 kb on - strandat 4709.441 kb on - strandat 4709.564 kb on - strand, within Pf6N2E2_6130at 4709.564 kb on - strand, within Pf6N2E2_6130at 4709.564 kb on - strand, within Pf6N2E2_6130at 4709.564 kb on - strand, within Pf6N2E2_6130at 4709.564 kb on - strand, within Pf6N2E2_6130at 4709.590 kb on - strand, within Pf6N2E2_6130at 4709.590 kb on - strand, within Pf6N2E2_6130at 4709.590 kb on - strand, within Pf6N2E2_6130at 4709.652 kb on + strand, within Pf6N2E2_6130at 4709.719 kb on + strandat 4709.738 kb on - strandat 4709.738 kb on - strandat 4709.754 kb on - strandat 4709.754 kb on - strandat 4709.754 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
remove
4,708,556 + -1.8
4,708,556 + +0.4
4,708,556 + -0.3
4,708,557 - -0.2
4,708,557 - -0.2
4,708,557 - +2.3
4,708,557 - -0.2
4,708,570 + -0.7
4,708,571 - -0.2
4,708,571 - +0.1
4,708,571 - -0.0
4,708,571 - -0.1
4,708,682 + +1.9
4,708,703 + -1.2
4,708,704 - -0.7
4,708,712 - +0.1
4,708,737 + +0.1
4,708,737 + -1.8
4,708,803 + Pf6N2E2_4034 0.10 -0.4
4,708,803 + Pf6N2E2_4034 0.10 -1.2
4,708,804 - Pf6N2E2_4034 0.11 +1.2
4,709,074 - Pf6N2E2_4034 0.53 +1.1
4,709,074 - Pf6N2E2_4034 0.53 +0.8
4,709,155 + Pf6N2E2_4034 0.66 -0.4
4,709,155 + Pf6N2E2_4034 0.66 -2.7
4,709,155 + Pf6N2E2_4034 0.66 -1.1
4,709,155 + Pf6N2E2_4034 0.66 -1.7
4,709,155 + Pf6N2E2_4034 0.66 +0.4
4,709,156 - Pf6N2E2_4034 0.66 +0.8
4,709,156 - Pf6N2E2_4034 0.66 +0.8
4,709,156 - Pf6N2E2_4034 0.66 +0.9
4,709,301 + Pf6N2E2_4034 0.88 +1.6
4,709,301 + Pf6N2E2_4034 0.88 -0.4
4,709,301 + Pf6N2E2_4034 0.88 -1.0
4,709,301 + Pf6N2E2_4034 0.88 +3.3
4,709,302 - Pf6N2E2_4034 0.89 -0.3
4,709,302 - Pf6N2E2_4034 0.89 -1.7
4,709,307 + Pf6N2E2_4034 0.89 +0.1
4,709,307 + Pf6N2E2_4034 0.89 -1.7
4,709,307 + Pf6N2E2_4034 0.89 +1.4
4,709,308 - Pf6N2E2_4034 0.90 +0.1
4,709,308 - Pf6N2E2_4034 0.90 +1.1
4,709,308 - Pf6N2E2_4034 0.90 +0.9
4,709,430 + -1.4
4,709,440 + +0.5
4,709,440 + +0.8
4,709,440 + +0.3
4,709,440 + +1.9
4,709,440 + +0.4
4,709,440 + +1.9
4,709,440 + +0.8
4,709,440 + -1.0
4,709,441 - +1.9
4,709,441 - -1.7
4,709,441 - +0.2
4,709,441 - -2.1
4,709,564 - Pf6N2E2_6130 0.14 -0.2
4,709,564 - Pf6N2E2_6130 0.14 +0.4
4,709,564 - Pf6N2E2_6130 0.14 -1.2
4,709,564 - Pf6N2E2_6130 0.14 -1.3
4,709,564 - Pf6N2E2_6130 0.14 -1.6
4,709,590 - Pf6N2E2_6130 0.36 +0.9
4,709,590 - Pf6N2E2_6130 0.36 -1.4
4,709,590 - Pf6N2E2_6130 0.36 -1.1
4,709,652 + Pf6N2E2_6130 0.88 -0.7
4,709,719 + -0.4
4,709,738 - -0.4
4,709,738 - +0.6
4,709,754 - -1.1
4,709,754 - +0.5
4,709,754 - -0.2

Or see this region's nucleotide sequence