Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5194

Experiment: sodium iodate 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5193 and Pf6N2E2_5194 are separated by 106 nucleotidesPf6N2E2_5194 and Pf6N2E2_5195 are separated by 95 nucleotidesPf6N2E2_5195 and Pf6N2E2_5196 are separated by 7 nucleotidesPf6N2E2_5196 and Pf6N2E2_5197 overlap by 19 nucleotidesPf6N2E2_5197 and Pf6N2E2_5198 are separated by 1 nucleotides Pf6N2E2_5193 - Short chain fatty acids transporter, at 5,988,398 to 5,989,882 _5193 Pf6N2E2_5194 - Methyl-accepting chemotaxis protein, at 5,989,989 to 5,991,350 _5194 Pf6N2E2_5195 - hypothetical protein, at 5,991,446 to 5,992,000 _5195 Pf6N2E2_5196 - Transcriptional regulator, Cro/CI family, at 5,992,008 to 5,992,241 _5196 Pf6N2E2_5197 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 5,992,223 to 5,992,345 _5197 Pf6N2E2_5198 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 5,992,347 to 5,993,582 _5198 Position (kb) 5989 5990 5991 5992Strain fitness (log2 ratio) -2 -1 0 1 2at 5989.362 kb on + strand, within Pf6N2E2_5193at 5989.362 kb on + strand, within Pf6N2E2_5193at 5989.363 kb on - strand, within Pf6N2E2_5193at 5989.386 kb on + strand, within Pf6N2E2_5193at 5989.823 kb on + strandat 5989.823 kb on + strandat 5989.823 kb on + strandat 5989.824 kb on - strandat 5989.834 kb on + strandat 5989.834 kb on + strandat 5989.835 kb on - strandat 5989.835 kb on - strandat 5989.835 kb on - strandat 5989.835 kb on - strandat 5989.886 kb on + strandat 5989.886 kb on + strandat 5989.886 kb on + strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.887 kb on - strandat 5989.969 kb on - strandat 5990.008 kb on + strandat 5990.008 kb on + strandat 5990.009 kb on - strandat 5990.039 kb on + strandat 5990.039 kb on + strandat 5990.039 kb on + strandat 5990.377 kb on + strand, within Pf6N2E2_5194at 5990.377 kb on + strand, within Pf6N2E2_5194at 5990.378 kb on - strand, within Pf6N2E2_5194at 5990.378 kb on - strand, within Pf6N2E2_5194at 5990.415 kb on + strand, within Pf6N2E2_5194at 5990.416 kb on - strand, within Pf6N2E2_5194at 5990.416 kb on - strand, within Pf6N2E2_5194at 5990.416 kb on - strand, within Pf6N2E2_5194at 5990.416 kb on - strand, within Pf6N2E2_5194at 5990.524 kb on + strand, within Pf6N2E2_5194at 5990.524 kb on + strand, within Pf6N2E2_5194at 5990.525 kb on - strand, within Pf6N2E2_5194at 5990.525 kb on - strand, within Pf6N2E2_5194at 5990.525 kb on - strand, within Pf6N2E2_5194at 5990.525 kb on - strand, within Pf6N2E2_5194at 5990.619 kb on + strand, within Pf6N2E2_5194at 5990.620 kb on - strand, within Pf6N2E2_5194at 5990.620 kb on - strand, within Pf6N2E2_5194at 5990.620 kb on - strand, within Pf6N2E2_5194at 5990.620 kb on - strand, within Pf6N2E2_5194at 5990.634 kb on + strand, within Pf6N2E2_5194at 5990.635 kb on - strand, within Pf6N2E2_5194at 5990.693 kb on + strand, within Pf6N2E2_5194at 5990.694 kb on - strand, within Pf6N2E2_5194at 5990.733 kb on + strand, within Pf6N2E2_5194at 5990.733 kb on + strand, within Pf6N2E2_5194at 5990.733 kb on + strand, within Pf6N2E2_5194at 5990.733 kb on + strand, within Pf6N2E2_5194at 5990.766 kb on + strand, within Pf6N2E2_5194at 5990.766 kb on + strand, within Pf6N2E2_5194at 5990.766 kb on + strand, within Pf6N2E2_5194at 5990.766 kb on + strand, within Pf6N2E2_5194at 5990.766 kb on + strand, within Pf6N2E2_5194at 5990.996 kb on + strand, within Pf6N2E2_5194at 5991.138 kb on - strand, within Pf6N2E2_5194at 5991.349 kb on - strandat 5991.349 kb on - strandat 5991.426 kb on + strandat 5991.426 kb on + strandat 5991.427 kb on - strandat 5991.427 kb on - strandat 5991.451 kb on + strandat 5991.452 kb on - strandat 5991.470 kb on + strandat 5991.670 kb on + strand, within Pf6N2E2_5195at 5991.671 kb on - strand, within Pf6N2E2_5195at 5991.728 kb on + strand, within Pf6N2E2_5195at 5991.743 kb on + strand, within Pf6N2E2_5195at 5991.767 kb on + strand, within Pf6N2E2_5195at 5991.767 kb on + strand, within Pf6N2E2_5195at 5991.767 kb on + strand, within Pf6N2E2_5195at 5991.768 kb on - strand, within Pf6N2E2_5195at 5991.768 kb on - strand, within Pf6N2E2_5195at 5991.889 kb on + strand, within Pf6N2E2_5195at 5991.890 kb on - strand, within Pf6N2E2_5195at 5991.932 kb on - strand, within Pf6N2E2_5195at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.033 kb on + strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.034 kb on - strand, within Pf6N2E2_5196at 5992.082 kb on - strand, within Pf6N2E2_5196at 5992.133 kb on + strand, within Pf6N2E2_5196at 5992.133 kb on + strand, within Pf6N2E2_5196at 5992.133 kb on + strand, within Pf6N2E2_5196at 5992.134 kb on - strand, within Pf6N2E2_5196at 5992.134 kb on - strand, within Pf6N2E2_5196at 5992.134 kb on - strand, within Pf6N2E2_5196at 5992.134 kb on - strand, within Pf6N2E2_5196at 5992.135 kb on + strand, within Pf6N2E2_5196at 5992.135 kb on + strand, within Pf6N2E2_5196at 5992.135 kb on + strand, within Pf6N2E2_5196at 5992.135 kb on + strand, within Pf6N2E2_5196at 5992.136 kb on - strand, within Pf6N2E2_5196at 5992.136 kb on - strand, within Pf6N2E2_5196at 5992.136 kb on - strand, within Pf6N2E2_5196at 5992.136 kb on - strand, within Pf6N2E2_5196at 5992.167 kb on + strand, within Pf6N2E2_5196at 5992.167 kb on + strand, within Pf6N2E2_5196at 5992.168 kb on - strand, within Pf6N2E2_5196at 5992.168 kb on - strand, within Pf6N2E2_5196at 5992.168 kb on - strand, within Pf6N2E2_5196at 5992.168 kb on - strand, within Pf6N2E2_5196at 5992.200 kb on + strand, within Pf6N2E2_5196at 5992.201 kb on - strand, within Pf6N2E2_5196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
remove
5,989,362 + Pf6N2E2_5193 0.65 -1.3
5,989,362 + Pf6N2E2_5193 0.65 +1.4
5,989,363 - Pf6N2E2_5193 0.65 -1.7
5,989,386 + Pf6N2E2_5193 0.67 -0.5
5,989,823 + -1.1
5,989,823 + +1.3
5,989,823 + +1.6
5,989,824 - -0.3
5,989,834 + -0.3
5,989,834 + -0.1
5,989,835 - -0.2
5,989,835 - +0.6
5,989,835 - -0.3
5,989,835 - +0.4
5,989,886 + -0.7
5,989,886 + -0.8
5,989,886 + +0.7
5,989,887 - -0.5
5,989,887 - +0.9
5,989,887 - -0.7
5,989,887 - +1.7
5,989,887 - -0.6
5,989,887 - -0.6
5,989,887 - +0.2
5,989,887 - -1.4
5,989,887 - +0.2
5,989,887 - +0.5
5,989,887 - -0.1
5,989,969 - +0.3
5,990,008 + +0.3
5,990,008 + +0.2
5,990,009 - +0.8
5,990,039 + +0.2
5,990,039 + -0.0
5,990,039 + +0.8
5,990,377 + Pf6N2E2_5194 0.28 -0.1
5,990,377 + Pf6N2E2_5194 0.28 +0.8
5,990,378 - Pf6N2E2_5194 0.29 +1.6
5,990,378 - Pf6N2E2_5194 0.29 +1.1
5,990,415 + Pf6N2E2_5194 0.31 -1.4
5,990,416 - Pf6N2E2_5194 0.31 -1.1
5,990,416 - Pf6N2E2_5194 0.31 +1.0
5,990,416 - Pf6N2E2_5194 0.31 -1.4
5,990,416 - Pf6N2E2_5194 0.31 -0.8
5,990,524 + Pf6N2E2_5194 0.39 +2.6
5,990,524 + Pf6N2E2_5194 0.39 -0.7
5,990,525 - Pf6N2E2_5194 0.39 +0.7
5,990,525 - Pf6N2E2_5194 0.39 -0.3
5,990,525 - Pf6N2E2_5194 0.39 +0.8
5,990,525 - Pf6N2E2_5194 0.39 +0.1
5,990,619 + Pf6N2E2_5194 0.46 -0.4
5,990,620 - Pf6N2E2_5194 0.46 -1.1
5,990,620 - Pf6N2E2_5194 0.46 +2.3
5,990,620 - Pf6N2E2_5194 0.46 -0.3
5,990,620 - Pf6N2E2_5194 0.46 -0.1
5,990,634 + Pf6N2E2_5194 0.47 +0.0
5,990,635 - Pf6N2E2_5194 0.47 +2.4
5,990,693 + Pf6N2E2_5194 0.52 -0.9
5,990,694 - Pf6N2E2_5194 0.52 -0.5
5,990,733 + Pf6N2E2_5194 0.55 +0.6
5,990,733 + Pf6N2E2_5194 0.55 +0.8
5,990,733 + Pf6N2E2_5194 0.55 +1.2
5,990,733 + Pf6N2E2_5194 0.55 -1.7
5,990,766 + Pf6N2E2_5194 0.57 -2.0
5,990,766 + Pf6N2E2_5194 0.57 +0.5
5,990,766 + Pf6N2E2_5194 0.57 +1.3
5,990,766 + Pf6N2E2_5194 0.57 +0.3
5,990,766 + Pf6N2E2_5194 0.57 -1.4
5,990,996 + Pf6N2E2_5194 0.74 +1.1
5,991,138 - Pf6N2E2_5194 0.84 +0.9
5,991,349 - +1.3
5,991,349 - +1.0
5,991,426 + -2.0
5,991,426 + -0.3
5,991,427 - +0.9
5,991,427 - +0.4
5,991,451 + -0.9
5,991,452 - -2.4
5,991,470 + -0.1
5,991,670 + Pf6N2E2_5195 0.40 +0.2
5,991,671 - Pf6N2E2_5195 0.41 +1.1
5,991,728 + Pf6N2E2_5195 0.51 +0.2
5,991,743 + Pf6N2E2_5195 0.54 -1.1
5,991,767 + Pf6N2E2_5195 0.58 -2.7
5,991,767 + Pf6N2E2_5195 0.58 -2.4
5,991,767 + Pf6N2E2_5195 0.58 -0.7
5,991,768 - Pf6N2E2_5195 0.58 +0.5
5,991,768 - Pf6N2E2_5195 0.58 -0.9
5,991,889 + Pf6N2E2_5195 0.80 +1.6
5,991,890 - Pf6N2E2_5195 0.80 -0.8
5,991,932 - Pf6N2E2_5195 0.88 +0.2
5,992,033 + Pf6N2E2_5196 0.11 +0.4
5,992,033 + Pf6N2E2_5196 0.11 -0.4
5,992,033 + Pf6N2E2_5196 0.11 -0.3
5,992,033 + Pf6N2E2_5196 0.11 +0.2
5,992,033 + Pf6N2E2_5196 0.11 -0.1
5,992,033 + Pf6N2E2_5196 0.11 +0.1
5,992,033 + Pf6N2E2_5196 0.11 +1.3
5,992,033 + Pf6N2E2_5196 0.11 -1.5
5,992,033 + Pf6N2E2_5196 0.11 +0.7
5,992,033 + Pf6N2E2_5196 0.11 -1.1
5,992,033 + Pf6N2E2_5196 0.11 -0.0
5,992,033 + Pf6N2E2_5196 0.11 -1.7
5,992,034 - Pf6N2E2_5196 0.11 +0.5
5,992,034 - Pf6N2E2_5196 0.11 +0.6
5,992,034 - Pf6N2E2_5196 0.11 -0.9
5,992,034 - Pf6N2E2_5196 0.11 -2.1
5,992,034 - Pf6N2E2_5196 0.11 +0.2
5,992,034 - Pf6N2E2_5196 0.11 -0.0
5,992,034 - Pf6N2E2_5196 0.11 +0.2
5,992,034 - Pf6N2E2_5196 0.11 +0.1
5,992,082 - Pf6N2E2_5196 0.32 +0.7
5,992,133 + Pf6N2E2_5196 0.53 -1.5
5,992,133 + Pf6N2E2_5196 0.53 -0.2
5,992,133 + Pf6N2E2_5196 0.53 +0.5
5,992,134 - Pf6N2E2_5196 0.54 -0.0
5,992,134 - Pf6N2E2_5196 0.54 +1.1
5,992,134 - Pf6N2E2_5196 0.54 +0.5
5,992,134 - Pf6N2E2_5196 0.54 -0.8
5,992,135 + Pf6N2E2_5196 0.54 -0.6
5,992,135 + Pf6N2E2_5196 0.54 +1.0
5,992,135 + Pf6N2E2_5196 0.54 -0.3
5,992,135 + Pf6N2E2_5196 0.54 -0.1
5,992,136 - Pf6N2E2_5196 0.55 -0.2
5,992,136 - Pf6N2E2_5196 0.55 +0.0
5,992,136 - Pf6N2E2_5196 0.55 +0.7
5,992,136 - Pf6N2E2_5196 0.55 -0.1
5,992,167 + Pf6N2E2_5196 0.68 +0.1
5,992,167 + Pf6N2E2_5196 0.68 -1.1
5,992,168 - Pf6N2E2_5196 0.68 -1.3
5,992,168 - Pf6N2E2_5196 0.68 +0.7
5,992,168 - Pf6N2E2_5196 0.68 +0.4
5,992,168 - Pf6N2E2_5196 0.68 +0.2
5,992,200 + Pf6N2E2_5196 0.82 +1.2
5,992,201 - Pf6N2E2_5196 0.82 +0.5

Or see this region's nucleotide sequence