Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4954

Experiment: sodium iodate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4953 and Pf6N2E2_4954 are separated by 11 nucleotidesPf6N2E2_4954 and Pf6N2E2_4955 are separated by 456 nucleotides Pf6N2E2_4953 - Putative lipase in cluster with Phosphatidate cytidylyltransferase, at 5,708,528 to 5,710,285 _4953 Pf6N2E2_4954 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 5,710,297 to 5,710,920 _4954 Pf6N2E2_4955 - acetyltransferase, GNAT family, at 5,711,377 to 5,711,835 _4955 Position (kb) 5710 5711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5709.324 kb on + strand, within Pf6N2E2_4953at 5709.324 kb on + strand, within Pf6N2E2_4953at 5709.672 kb on + strand, within Pf6N2E2_4953at 5709.729 kb on + strand, within Pf6N2E2_4953at 5709.730 kb on - strand, within Pf6N2E2_4953at 5709.777 kb on + strand, within Pf6N2E2_4953at 5709.777 kb on + strand, within Pf6N2E2_4953at 5709.778 kb on - strand, within Pf6N2E2_4953at 5709.846 kb on + strand, within Pf6N2E2_4953at 5709.846 kb on + strand, within Pf6N2E2_4953at 5709.847 kb on - strand, within Pf6N2E2_4953at 5709.847 kb on - strand, within Pf6N2E2_4953at 5709.847 kb on - strand, within Pf6N2E2_4953at 5709.847 kb on - strand, within Pf6N2E2_4953at 5710.298 kb on + strandat 5710.298 kb on + strandat 5710.299 kb on - strandat 5710.299 kb on - strandat 5710.299 kb on - strandat 5710.359 kb on + strandat 5710.359 kb on + strandat 5710.359 kb on + strandat 5710.359 kb on + strandat 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.360 kb on - strand, within Pf6N2E2_4954at 5710.361 kb on + strand, within Pf6N2E2_4954at 5710.361 kb on + strand, within Pf6N2E2_4954at 5710.361 kb on + strand, within Pf6N2E2_4954at 5710.362 kb on - strand, within Pf6N2E2_4954at 5710.362 kb on - strand, within Pf6N2E2_4954at 5710.639 kb on + strand, within Pf6N2E2_4954at 5710.640 kb on - strand, within Pf6N2E2_4954at 5710.640 kb on - strand, within Pf6N2E2_4954at 5710.853 kb on + strand, within Pf6N2E2_4954at 5710.853 kb on + strand, within Pf6N2E2_4954at 5710.854 kb on - strand, within Pf6N2E2_4954at 5710.907 kb on + strandat 5710.907 kb on + strandat 5710.907 kb on + strandat 5710.907 kb on + strandat 5710.907 kb on + strandat 5710.907 kb on + strandat 5710.908 kb on - strandat 5710.957 kb on - strandat 5710.957 kb on - strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.958 kb on + strandat 5710.959 kb on - strandat 5710.959 kb on - strandat 5710.959 kb on - strandat 5710.959 kb on - strandat 5710.959 kb on - strandat 5710.972 kb on + strandat 5710.972 kb on + strandat 5710.973 kb on - strandat 5710.977 kb on + strandat 5710.977 kb on + strandat 5710.978 kb on - strandat 5710.978 kb on - strandat 5710.978 kb on - strandat 5711.031 kb on + strandat 5711.031 kb on + strandat 5711.032 kb on - strandat 5711.032 kb on - strandat 5711.051 kb on + strandat 5711.051 kb on + strandat 5711.051 kb on + strandat 5711.052 kb on - strandat 5711.255 kb on + strandat 5711.358 kb on + strandat 5711.358 kb on + strandat 5711.358 kb on + strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.359 kb on - strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.362 kb on + strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.363 kb on - strandat 5711.461 kb on + strand, within Pf6N2E2_4955at 5711.461 kb on + strand, within Pf6N2E2_4955at 5711.462 kb on - strand, within Pf6N2E2_4955at 5711.462 kb on - strand, within Pf6N2E2_4955at 5711.752 kb on + strand, within Pf6N2E2_4955at 5711.752 kb on + strand, within Pf6N2E2_4955at 5711.752 kb on + strand, within Pf6N2E2_4955at 5711.752 kb on + strand, within Pf6N2E2_4955at 5711.755 kb on + strand, within Pf6N2E2_4955at 5711.755 kb on + strand, within Pf6N2E2_4955at 5711.755 kb on + strand, within Pf6N2E2_4955at 5711.756 kb on - strand, within Pf6N2E2_4955at 5711.756 kb on - strand, within Pf6N2E2_4955at 5711.756 kb on - strand, within Pf6N2E2_4955at 5711.817 kb on + strandat 5711.817 kb on + strandat 5711.817 kb on + strandat 5711.818 kb on - strandat 5711.818 kb on - strandat 5711.818 kb on - strandat 5711.818 kb on - strandat 5711.831 kb on + strandat 5711.831 kb on + strandat 5711.831 kb on + strandat 5711.831 kb on + strandat 5711.831 kb on + strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.832 kb on - strandat 5711.834 kb on - strandat 5711.834 kb on - strandat 5711.834 kb on - strandat 5711.834 kb on - strandat 5711.865 kb on + strandat 5711.872 kb on - strandat 5711.884 kb on + strandat 5711.884 kb on + strandat 5711.885 kb on - strandat 5711.911 kb on - strandat 5711.911 kb on - strandat 5711.911 kb on - strandat 5711.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
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5,709,324 + Pf6N2E2_4953 0.45 -0.2
5,709,324 + Pf6N2E2_4953 0.45 +0.1
5,709,672 + Pf6N2E2_4953 0.65 +1.9
5,709,729 + Pf6N2E2_4953 0.68 +0.1
5,709,730 - Pf6N2E2_4953 0.68 -0.0
5,709,777 + Pf6N2E2_4953 0.71 -1.3
5,709,777 + Pf6N2E2_4953 0.71 +2.7
5,709,778 - Pf6N2E2_4953 0.71 -2.1
5,709,846 + Pf6N2E2_4953 0.75 -0.6
5,709,846 + Pf6N2E2_4953 0.75 -0.1
5,709,847 - Pf6N2E2_4953 0.75 -0.1
5,709,847 - Pf6N2E2_4953 0.75 -0.5
5,709,847 - Pf6N2E2_4953 0.75 +1.1
5,709,847 - Pf6N2E2_4953 0.75 -0.0
5,710,298 + -2.8
5,710,298 + +0.1
5,710,299 - -0.3
5,710,299 - +0.4
5,710,299 - +0.9
5,710,359 + -1.5
5,710,359 + -0.5
5,710,359 + +1.7
5,710,359 + -2.0
5,710,360 - Pf6N2E2_4954 0.10 +1.0
5,710,360 - Pf6N2E2_4954 0.10 +0.1
5,710,360 - Pf6N2E2_4954 0.10 +0.5
5,710,360 - Pf6N2E2_4954 0.10 +1.6
5,710,360 - Pf6N2E2_4954 0.10 -0.3
5,710,360 - Pf6N2E2_4954 0.10 +0.4
5,710,360 - Pf6N2E2_4954 0.10 -1.5
5,710,361 + Pf6N2E2_4954 0.10 -0.0
5,710,361 + Pf6N2E2_4954 0.10 -0.0
5,710,361 + Pf6N2E2_4954 0.10 +1.9
5,710,362 - Pf6N2E2_4954 0.10 -0.9
5,710,362 - Pf6N2E2_4954 0.10 -0.4
5,710,639 + Pf6N2E2_4954 0.55 -2.6
5,710,640 - Pf6N2E2_4954 0.55 -1.6
5,710,640 - Pf6N2E2_4954 0.55 +0.6
5,710,853 + Pf6N2E2_4954 0.89 -0.4
5,710,853 + Pf6N2E2_4954 0.89 +0.3
5,710,854 - Pf6N2E2_4954 0.89 -1.1
5,710,907 + +2.0
5,710,907 + +0.6
5,710,907 + -1.0
5,710,907 + +1.3
5,710,907 + -0.5
5,710,907 + +0.1
5,710,908 - +0.3
5,710,957 - +0.1
5,710,957 - +0.1
5,710,958 + +1.7
5,710,958 + +0.1
5,710,958 + +1.1
5,710,958 + -0.3
5,710,958 + +0.6
5,710,958 + -1.5
5,710,958 + -1.0
5,710,958 + -0.2
5,710,959 - +0.2
5,710,959 - +0.1
5,710,959 - +0.4
5,710,959 - +1.4
5,710,959 - -2.4
5,710,972 + -0.8
5,710,972 + -0.3
5,710,973 - +0.8
5,710,977 + +0.0
5,710,977 + -0.5
5,710,978 - +0.8
5,710,978 - -1.6
5,710,978 - -1.0
5,711,031 + -3.0
5,711,031 + -0.2
5,711,032 - -1.0
5,711,032 - -0.4
5,711,051 + +0.0
5,711,051 + -2.0
5,711,051 + +0.3
5,711,052 - +0.4
5,711,255 + +1.4
5,711,358 + +0.3
5,711,358 + +0.9
5,711,358 + -0.3
5,711,359 - +0.9
5,711,359 - -0.9
5,711,359 - +0.3
5,711,359 - +0.6
5,711,359 - +0.7
5,711,359 - -0.6
5,711,359 - +1.9
5,711,359 - -0.6
5,711,362 + +0.1
5,711,362 + +0.6
5,711,362 + +0.6
5,711,362 + +0.0
5,711,362 + -0.3
5,711,362 + +1.1
5,711,362 + -1.8
5,711,363 - -0.9
5,711,363 - -1.0
5,711,363 - -0.1
5,711,363 - +0.7
5,711,363 - -0.6
5,711,363 - -0.1
5,711,363 - +1.0
5,711,363 - -1.2
5,711,363 - +0.1
5,711,363 - -0.0
5,711,363 - -1.5
5,711,461 + Pf6N2E2_4955 0.18 -0.3
5,711,461 + Pf6N2E2_4955 0.18 +1.6
5,711,462 - Pf6N2E2_4955 0.19 +1.1
5,711,462 - Pf6N2E2_4955 0.19 +1.5
5,711,752 + Pf6N2E2_4955 0.82 -1.1
5,711,752 + Pf6N2E2_4955 0.82 +1.3
5,711,752 + Pf6N2E2_4955 0.82 -2.5
5,711,752 + Pf6N2E2_4955 0.82 +1.6
5,711,755 + Pf6N2E2_4955 0.82 -1.0
5,711,755 + Pf6N2E2_4955 0.82 +0.1
5,711,755 + Pf6N2E2_4955 0.82 +0.8
5,711,756 - Pf6N2E2_4955 0.83 +1.1
5,711,756 - Pf6N2E2_4955 0.83 +1.7
5,711,756 - Pf6N2E2_4955 0.83 +0.3
5,711,817 + -1.3
5,711,817 + -0.8
5,711,817 + +0.8
5,711,818 - +0.2
5,711,818 - +0.2
5,711,818 - -0.2
5,711,818 - -1.7
5,711,831 + -0.7
5,711,831 + -0.3
5,711,831 + +1.1
5,711,831 + +1.1
5,711,831 + +0.3
5,711,832 - +0.6
5,711,832 - -0.4
5,711,832 - -1.1
5,711,832 - +0.5
5,711,832 - -1.6
5,711,832 - -0.5
5,711,832 - +0.1
5,711,834 - +1.1
5,711,834 - -0.8
5,711,834 - +0.2
5,711,834 - -0.2
5,711,865 + -0.1
5,711,872 - +0.4
5,711,884 + +0.4
5,711,884 + -0.2
5,711,885 - +0.1
5,711,911 - -0.6
5,711,911 - -0.9
5,711,911 - +0.6
5,711,911 - -0.6

Or see this region's nucleotide sequence