Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_488

Experiment: sodium iodate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_487 and Pf6N2E2_488 are separated by 58 nucleotidesPf6N2E2_488 and Pf6N2E2_489 are separated by 42 nucleotides Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390 _487 Pf6N2E2_488 - Gluconolactonase (EC 3.1.1.17), at 554,449 to 555,354 _488 Pf6N2E2_489 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 555,397 to 556,218 _489 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2 3at 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.735 kb on + strand, within Pf6N2E2_487at 554.193 kb on + strand, within Pf6N2E2_487at 554.194 kb on - strand, within Pf6N2E2_487at 554.210 kb on - strand, within Pf6N2E2_487at 554.375 kb on + strandat 554.375 kb on + strandat 554.376 kb on - strandat 554.376 kb on - strandat 554.376 kb on - strandat 554.711 kb on + strand, within Pf6N2E2_488at 554.712 kb on - strand, within Pf6N2E2_488at 554.814 kb on - strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.862 kb on - strand, within Pf6N2E2_488at 554.960 kb on + strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 555.231 kb on + strand, within Pf6N2E2_488at 555.231 kb on + strand, within Pf6N2E2_488at 555.276 kb on - strandat 555.440 kb on + strandat 555.584 kb on + strand, within Pf6N2E2_489at 555.584 kb on + strand, within Pf6N2E2_489at 555.615 kb on - strand, within Pf6N2E2_489at 555.747 kb on - strand, within Pf6N2E2_489at 555.770 kb on + strand, within Pf6N2E2_489at 555.770 kb on + strand, within Pf6N2E2_489at 555.771 kb on - strand, within Pf6N2E2_489at 555.771 kb on - strand, within Pf6N2E2_489at 555.791 kb on + strand, within Pf6N2E2_489at 555.791 kb on + strand, within Pf6N2E2_489at 555.791 kb on + strand, within Pf6N2E2_489at 555.843 kb on - strand, within Pf6N2E2_489at 555.911 kb on + strand, within Pf6N2E2_489at 555.911 kb on + strand, within Pf6N2E2_489at 555.911 kb on + strand, within Pf6N2E2_489at 555.911 kb on + strand, within Pf6N2E2_489at 556.177 kb on + strandat 556.177 kb on + strandat 556.177 kb on + strandat 556.178 kb on - strandat 556.178 kb on - strandat 556.178 kb on - strandat 556.224 kb on + strandat 556.225 kb on - strandat 556.237 kb on + strandat 556.237 kb on + strandat 556.246 kb on + strandat 556.246 kb on + strandat 556.300 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
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553,501 + +1.6
553,501 + +0.7
553,501 + +1.0
553,502 - -0.3
553,502 - -0.5
553,502 - +1.0
553,717 + Pf6N2E2_487 0.30 -0.8
553,717 + Pf6N2E2_487 0.30 +0.4
553,717 + Pf6N2E2_487 0.30 +0.2
553,717 + Pf6N2E2_487 0.30 -1.8
553,718 - Pf6N2E2_487 0.31 -1.0
553,718 - Pf6N2E2_487 0.31 -0.7
553,718 - Pf6N2E2_487 0.31 +0.2
553,720 + Pf6N2E2_487 0.31 +1.1
553,720 + Pf6N2E2_487 0.31 -0.5
553,720 + Pf6N2E2_487 0.31 -0.6
553,720 + Pf6N2E2_487 0.31 +1.2
553,720 + Pf6N2E2_487 0.31 +1.0
553,721 - Pf6N2E2_487 0.31 +1.6
553,721 - Pf6N2E2_487 0.31 -1.0
553,735 + Pf6N2E2_487 0.32 +0.3
554,193 + Pf6N2E2_487 0.80 -1.1
554,194 - Pf6N2E2_487 0.80 -0.5
554,210 - Pf6N2E2_487 0.81 -0.4
554,375 + +0.4
554,375 + +2.0
554,376 - -0.8
554,376 - -0.0
554,376 - +1.0
554,711 + Pf6N2E2_488 0.29 +1.1
554,712 - Pf6N2E2_488 0.29 +2.0
554,814 - Pf6N2E2_488 0.40 -0.6
554,861 + Pf6N2E2_488 0.45 +1.0
554,861 + Pf6N2E2_488 0.45 -1.5
554,861 + Pf6N2E2_488 0.45 +0.7
554,861 + Pf6N2E2_488 0.45 -1.5
554,861 + Pf6N2E2_488 0.45 -1.3
554,861 + Pf6N2E2_488 0.45 -0.1
554,862 - Pf6N2E2_488 0.46 +0.6
554,960 + Pf6N2E2_488 0.56 -0.2
554,961 - Pf6N2E2_488 0.57 +1.3
554,961 - Pf6N2E2_488 0.57 +1.4
554,961 - Pf6N2E2_488 0.57 -0.2
555,231 + Pf6N2E2_488 0.86 +1.6
555,231 + Pf6N2E2_488 0.86 -0.5
555,276 - +1.2
555,440 + -0.8
555,584 + Pf6N2E2_489 0.23 -0.1
555,584 + Pf6N2E2_489 0.23 +1.2
555,615 - Pf6N2E2_489 0.27 -0.5
555,747 - Pf6N2E2_489 0.43 +0.2
555,770 + Pf6N2E2_489 0.45 +0.7
555,770 + Pf6N2E2_489 0.45 -1.1
555,771 - Pf6N2E2_489 0.45 -1.8
555,771 - Pf6N2E2_489 0.45 -0.2
555,791 + Pf6N2E2_489 0.48 +0.1
555,791 + Pf6N2E2_489 0.48 -0.0
555,791 + Pf6N2E2_489 0.48 +0.7
555,843 - Pf6N2E2_489 0.54 -1.3
555,911 + Pf6N2E2_489 0.63 +0.2
555,911 + Pf6N2E2_489 0.63 +0.8
555,911 + Pf6N2E2_489 0.63 +0.2
555,911 + Pf6N2E2_489 0.63 +3.2
556,177 + +0.7
556,177 + +2.4
556,177 + +0.9
556,178 - -1.3
556,178 - -0.8
556,178 - +0.3
556,224 + -0.2
556,225 - -1.3
556,237 + +0.4
556,237 + -0.6
556,246 + +2.8
556,246 + +0.4
556,300 + -0.8

Or see this region's nucleotide sequence