Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_365

Experiment: sodium iodate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_363 and Pf6N2E2_364 overlap by 4 nucleotidesPf6N2E2_364 and Pf6N2E2_365 overlap by 19 nucleotidesPf6N2E2_365 and Pf6N2E2_366 overlap by 4 nucleotides Pf6N2E2_363 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 428,958 to 430,802 _363 Pf6N2E2_364 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 430,799 to 431,107 _364 Pf6N2E2_365 - Ferredoxin reductase, at 431,089 to 432,480 _365 Pf6N2E2_366 - Opine oxidase subunit B, at 432,477 to 433,631 _366 Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2at 430.128 kb on + strand, within Pf6N2E2_363at 430.128 kb on + strand, within Pf6N2E2_363at 430.129 kb on - strand, within Pf6N2E2_363at 430.129 kb on - strand, within Pf6N2E2_363at 430.129 kb on - strand, within Pf6N2E2_363at 430.386 kb on + strand, within Pf6N2E2_363at 430.387 kb on - strand, within Pf6N2E2_363at 430.449 kb on + strand, within Pf6N2E2_363at 430.449 kb on + strand, within Pf6N2E2_363at 430.450 kb on - strand, within Pf6N2E2_363at 430.512 kb on + strand, within Pf6N2E2_363at 430.794 kb on + strandat 430.794 kb on + strandat 431.046 kb on + strand, within Pf6N2E2_364at 431.231 kb on - strand, within Pf6N2E2_365at 431.263 kb on + strand, within Pf6N2E2_365at 431.264 kb on - strand, within Pf6N2E2_365at 431.425 kb on + strand, within Pf6N2E2_365at 431.500 kb on + strand, within Pf6N2E2_365at 431.500 kb on + strand, within Pf6N2E2_365at 431.500 kb on + strand, within Pf6N2E2_365at 431.500 kb on + strand, within Pf6N2E2_365at 431.501 kb on - strand, within Pf6N2E2_365at 431.590 kb on + strand, within Pf6N2E2_365at 431.590 kb on + strand, within Pf6N2E2_365at 431.591 kb on - strand, within Pf6N2E2_365at 431.740 kb on + strand, within Pf6N2E2_365at 432.488 kb on + strandat 432.488 kb on + strandat 432.772 kb on + strand, within Pf6N2E2_366at 432.895 kb on - strand, within Pf6N2E2_366at 433.177 kb on - strand, within Pf6N2E2_366at 433.177 kb on - strand, within Pf6N2E2_366at 433.204 kb on - strand, within Pf6N2E2_366at 433.204 kb on - strand, within Pf6N2E2_366at 433.231 kb on - strand, within Pf6N2E2_366at 433.231 kb on - strand, within Pf6N2E2_366at 433.256 kb on + strand, within Pf6N2E2_366at 433.256 kb on + strand, within Pf6N2E2_366at 433.311 kb on + strand, within Pf6N2E2_366at 433.311 kb on + strand, within Pf6N2E2_366at 433.311 kb on + strand, within Pf6N2E2_366at 433.312 kb on - strand, within Pf6N2E2_366at 433.312 kb on - strand, within Pf6N2E2_366at 433.416 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.470 kb on + strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.471 kb on - strand, within Pf6N2E2_366at 433.474 kb on - strand, within Pf6N2E2_366at 433.474 kb on - strand, within Pf6N2E2_366at 433.474 kb on - strand, within Pf6N2E2_366at 433.474 kb on - strand, within Pf6N2E2_366

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
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430,128 + Pf6N2E2_363 0.63 +0.6
430,128 + Pf6N2E2_363 0.63 +0.7
430,129 - Pf6N2E2_363 0.63 +2.0
430,129 - Pf6N2E2_363 0.63 -1.2
430,129 - Pf6N2E2_363 0.63 +0.5
430,386 + Pf6N2E2_363 0.77 +0.7
430,387 - Pf6N2E2_363 0.77 -0.5
430,449 + Pf6N2E2_363 0.81 +0.0
430,449 + Pf6N2E2_363 0.81 +0.0
430,450 - Pf6N2E2_363 0.81 -0.2
430,512 + Pf6N2E2_363 0.84 +1.1
430,794 + +1.0
430,794 + -0.4
431,046 + Pf6N2E2_364 0.80 -1.1
431,231 - Pf6N2E2_365 0.10 +0.2
431,263 + Pf6N2E2_365 0.12 -0.4
431,264 - Pf6N2E2_365 0.13 -2.6
431,425 + Pf6N2E2_365 0.24 -0.5
431,500 + Pf6N2E2_365 0.30 -1.7
431,500 + Pf6N2E2_365 0.30 -0.3
431,500 + Pf6N2E2_365 0.30 -0.7
431,500 + Pf6N2E2_365 0.30 -0.9
431,501 - Pf6N2E2_365 0.30 -1.0
431,590 + Pf6N2E2_365 0.36 -1.4
431,590 + Pf6N2E2_365 0.36 -1.1
431,591 - Pf6N2E2_365 0.36 +0.8
431,740 + Pf6N2E2_365 0.47 +1.3
432,488 + +0.3
432,488 + +0.2
432,772 + Pf6N2E2_366 0.26 +0.2
432,895 - Pf6N2E2_366 0.36 +1.2
433,177 - Pf6N2E2_366 0.61 -0.2
433,177 - Pf6N2E2_366 0.61 +0.7
433,204 - Pf6N2E2_366 0.63 -0.1
433,204 - Pf6N2E2_366 0.63 +0.6
433,231 - Pf6N2E2_366 0.65 -0.6
433,231 - Pf6N2E2_366 0.65 -1.6
433,256 + Pf6N2E2_366 0.67 -2.0
433,256 + Pf6N2E2_366 0.67 +0.8
433,311 + Pf6N2E2_366 0.72 -1.1
433,311 + Pf6N2E2_366 0.72 -0.1
433,311 + Pf6N2E2_366 0.72 -0.4
433,312 - Pf6N2E2_366 0.72 +0.7
433,312 - Pf6N2E2_366 0.72 -0.3
433,416 + Pf6N2E2_366 0.81 -0.6
433,470 + Pf6N2E2_366 0.86 -0.5
433,470 + Pf6N2E2_366 0.86 +0.1
433,470 + Pf6N2E2_366 0.86 -0.2
433,470 + Pf6N2E2_366 0.86 +0.8
433,470 + Pf6N2E2_366 0.86 +0.4
433,470 + Pf6N2E2_366 0.86 +2.0
433,471 - Pf6N2E2_366 0.86 -0.5
433,471 - Pf6N2E2_366 0.86 -0.1
433,471 - Pf6N2E2_366 0.86 +0.4
433,471 - Pf6N2E2_366 0.86 +0.4
433,471 - Pf6N2E2_366 0.86 +0.6
433,471 - Pf6N2E2_366 0.86 +0.3
433,474 - Pf6N2E2_366 0.86 -0.1
433,474 - Pf6N2E2_366 0.86 -2.5
433,474 - Pf6N2E2_366 0.86 +0.8
433,474 - Pf6N2E2_366 0.86 -0.6

Or see this region's nucleotide sequence