Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_313

Experiment: sodium iodate 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_311 and Pf6N2E2_312 are separated by 80 nucleotidesPf6N2E2_312 and Pf6N2E2_313 are separated by 164 nucleotidesPf6N2E2_313 and Pf6N2E2_314 are separated by 40 nucleotidesPf6N2E2_314 and Pf6N2E2_315 are separated by 193 nucleotides Pf6N2E2_311 - hypothetical protein, at 378,335 to 378,685 _311 Pf6N2E2_312 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,766 to 379,197 _312 Pf6N2E2_313 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 379,362 to 381,089 _313 Pf6N2E2_314 - Isochorismatase (EC 3.3.2.1), at 381,130 to 381,663 _314 Pf6N2E2_315 - probable transmembrane protein, at 381,857 to 382,717 _315 Position (kb) 379 380 381 382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 378.422 kb on + strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.558 kb on - strand, within Pf6N2E2_311at 378.558 kb on - strand, within Pf6N2E2_311at 378.691 kb on + strandat 378.691 kb on + strandat 378.691 kb on + strandat 378.691 kb on + strandat 378.692 kb on - strandat 378.733 kb on + strandat 378.733 kb on + strandat 378.768 kb on - strandat 378.863 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.120 kb on - strand, within Pf6N2E2_312at 379.120 kb on - strand, within Pf6N2E2_312at 379.121 kb on + strand, within Pf6N2E2_312at 379.121 kb on + strand, within Pf6N2E2_312at 379.122 kb on - strand, within Pf6N2E2_312at 379.189 kb on + strandat 379.210 kb on + strandat 379.290 kb on - strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.312 kb on + strandat 379.312 kb on + strandat 379.313 kb on - strandat 379.313 kb on - strandat 379.313 kb on - strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.423 kb on - strandat 379.423 kb on - strandat 379.423 kb on - strandat 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.800 kb on + strand, within Pf6N2E2_313at 379.800 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.128 kb on - strand, within Pf6N2E2_313at 380.163 kb on + strand, within Pf6N2E2_313at 380.292 kb on + strand, within Pf6N2E2_313at 380.320 kb on - strand, within Pf6N2E2_313at 380.337 kb on + strand, within Pf6N2E2_313at 380.337 kb on + strand, within Pf6N2E2_313at 380.338 kb on - strand, within Pf6N2E2_313at 380.387 kb on + strand, within Pf6N2E2_313at 380.497 kb on - strand, within Pf6N2E2_313at 380.538 kb on + strand, within Pf6N2E2_313at 380.538 kb on + strand, within Pf6N2E2_313at 380.538 kb on + strand, within Pf6N2E2_313at 380.538 kb on + strand, within Pf6N2E2_313at 380.539 kb on - strand, within Pf6N2E2_313at 380.539 kb on - strand, within Pf6N2E2_313at 380.646 kb on + strand, within Pf6N2E2_313at 380.647 kb on - strand, within Pf6N2E2_313at 380.647 kb on - strand, within Pf6N2E2_313at 380.799 kb on - strand, within Pf6N2E2_313at 380.817 kb on + strand, within Pf6N2E2_313at 381.039 kb on + strandat 381.039 kb on + strandat 381.040 kb on - strandat 381.040 kb on - strandat 381.040 kb on - strandat 381.040 kb on - strandat 381.040 kb on - strandat 381.304 kb on + strand, within Pf6N2E2_314at 381.304 kb on + strand, within Pf6N2E2_314at 381.304 kb on + strand, within Pf6N2E2_314at 381.304 kb on + strand, within Pf6N2E2_314at 381.304 kb on + strand, within Pf6N2E2_314at 381.305 kb on - strand, within Pf6N2E2_314at 381.305 kb on - strand, within Pf6N2E2_314at 381.305 kb on - strand, within Pf6N2E2_314at 381.305 kb on - strand, within Pf6N2E2_314at 381.392 kb on - strand, within Pf6N2E2_314at 381.661 kb on + strandat 381.682 kb on - strandat 381.682 kb on - strandat 381.691 kb on + strandat 381.885 kb on + strandat 381.885 kb on + strandat 381.886 kb on - strandat 381.886 kb on - strandat 382.042 kb on + strand, within Pf6N2E2_315at 382.043 kb on - strand, within Pf6N2E2_315at 382.043 kb on - strand, within Pf6N2E2_315at 382.043 kb on - strand, within Pf6N2E2_315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
remove
378,422 + Pf6N2E2_311 0.25 +1.0
378,423 - Pf6N2E2_311 0.25 -1.3
378,423 - Pf6N2E2_311 0.25 +0.2
378,423 - Pf6N2E2_311 0.25 -0.9
378,423 - Pf6N2E2_311 0.25 +1.8
378,558 - Pf6N2E2_311 0.64 -0.6
378,558 - Pf6N2E2_311 0.64 -0.9
378,691 + -1.0
378,691 + -0.1
378,691 + +0.4
378,691 + +0.8
378,692 - +0.4
378,733 + +3.0
378,733 + +0.4
378,768 - +0.2
378,863 + Pf6N2E2_312 0.22 -0.5
379,007 + Pf6N2E2_312 0.56 -1.2
379,007 + Pf6N2E2_312 0.56 +0.6
379,007 + Pf6N2E2_312 0.56 -0.4
379,007 + Pf6N2E2_312 0.56 -1.1
379,008 - Pf6N2E2_312 0.56 +0.4
379,008 - Pf6N2E2_312 0.56 -0.8
379,008 - Pf6N2E2_312 0.56 -0.5
379,120 - Pf6N2E2_312 0.82 -0.9
379,120 - Pf6N2E2_312 0.82 -0.1
379,121 + Pf6N2E2_312 0.82 +0.2
379,121 + Pf6N2E2_312 0.82 +0.1
379,122 - Pf6N2E2_312 0.82 +0.4
379,189 + -0.6
379,210 + -1.0
379,290 - +2.0
379,308 + -0.1
379,308 + +0.1
379,308 + -0.2
379,308 + -0.8
379,308 + -1.4
379,308 + +0.3
379,308 + +1.5
379,308 + +0.1
379,308 + -0.9
379,309 - +1.8
379,309 - -1.7
379,309 - -0.0
379,309 - +0.1
379,309 - +0.3
379,309 - -0.1
379,309 - +0.8
379,309 - +1.3
379,309 - +0.0
379,309 - -1.9
379,312 + -1.0
379,312 + -0.1
379,313 - +0.0
379,313 - -0.4
379,313 - -1.4
379,422 + +1.5
379,422 + -0.1
379,422 + -0.3
379,422 + -1.9
379,422 + +0.0
379,423 - -0.4
379,423 - +1.6
379,423 - +0.4
379,695 + Pf6N2E2_313 0.19 -1.8
379,695 + Pf6N2E2_313 0.19 +1.5
379,695 + Pf6N2E2_313 0.19 +0.8
379,695 + Pf6N2E2_313 0.19 +1.8
379,695 + Pf6N2E2_313 0.19 -1.2
379,695 + Pf6N2E2_313 0.19 +1.8
379,695 + Pf6N2E2_313 0.19 +1.8
379,695 + Pf6N2E2_313 0.19 -0.4
379,695 + Pf6N2E2_313 0.19 +0.7
379,695 + Pf6N2E2_313 0.19 +0.2
379,696 - Pf6N2E2_313 0.19 +1.8
379,696 - Pf6N2E2_313 0.19 -0.5
379,696 - Pf6N2E2_313 0.19 +0.0
379,696 - Pf6N2E2_313 0.19 +1.7
379,696 - Pf6N2E2_313 0.19 +1.6
379,696 - Pf6N2E2_313 0.19 -0.6
379,800 + Pf6N2E2_313 0.25 +1.1
379,800 + Pf6N2E2_313 0.25 -1.4
380,046 + Pf6N2E2_313 0.40 +0.3
380,046 + Pf6N2E2_313 0.40 +1.3
380,046 + Pf6N2E2_313 0.40 -0.3
380,047 - Pf6N2E2_313 0.40 -0.2
380,047 - Pf6N2E2_313 0.40 +1.6
380,047 - Pf6N2E2_313 0.40 +0.0
380,047 - Pf6N2E2_313 0.40 +1.5
380,047 - Pf6N2E2_313 0.40 -1.1
380,127 + Pf6N2E2_313 0.44 +1.2
380,127 + Pf6N2E2_313 0.44 +0.8
380,127 + Pf6N2E2_313 0.44 -0.2
380,127 + Pf6N2E2_313 0.44 +0.5
380,127 + Pf6N2E2_313 0.44 +0.0
380,128 - Pf6N2E2_313 0.44 +0.0
380,163 + Pf6N2E2_313 0.46 +0.5
380,292 + Pf6N2E2_313 0.54 +0.9
380,320 - Pf6N2E2_313 0.55 -1.0
380,337 + Pf6N2E2_313 0.56 -0.8
380,337 + Pf6N2E2_313 0.56 -0.6
380,338 - Pf6N2E2_313 0.56 +2.2
380,387 + Pf6N2E2_313 0.59 +0.8
380,497 - Pf6N2E2_313 0.66 -0.2
380,538 + Pf6N2E2_313 0.68 -0.4
380,538 + Pf6N2E2_313 0.68 +0.9
380,538 + Pf6N2E2_313 0.68 +0.0
380,538 + Pf6N2E2_313 0.68 -0.6
380,539 - Pf6N2E2_313 0.68 +0.0
380,539 - Pf6N2E2_313 0.68 +1.3
380,646 + Pf6N2E2_313 0.74 -0.8
380,647 - Pf6N2E2_313 0.74 +0.0
380,647 - Pf6N2E2_313 0.74 -0.0
380,799 - Pf6N2E2_313 0.83 +1.0
380,817 + Pf6N2E2_313 0.84 -1.4
381,039 + +2.0
381,039 + -0.1
381,040 - +1.0
381,040 - -0.9
381,040 - +0.2
381,040 - -0.4
381,040 - +0.4
381,304 + Pf6N2E2_314 0.33 +0.3
381,304 + Pf6N2E2_314 0.33 -0.7
381,304 + Pf6N2E2_314 0.33 +0.8
381,304 + Pf6N2E2_314 0.33 -0.1
381,304 + Pf6N2E2_314 0.33 -0.0
381,305 - Pf6N2E2_314 0.33 +0.4
381,305 - Pf6N2E2_314 0.33 +2.0
381,305 - Pf6N2E2_314 0.33 +0.9
381,305 - Pf6N2E2_314 0.33 +0.1
381,392 - Pf6N2E2_314 0.49 -1.1
381,661 + -1.2
381,682 - -0.7
381,682 - -0.3
381,691 + +0.1
381,885 + +1.7
381,885 + +0.0
381,886 - +1.3
381,886 - +1.2
382,042 + Pf6N2E2_315 0.21 +0.9
382,043 - Pf6N2E2_315 0.22 -0.9
382,043 - Pf6N2E2_315 0.22 +0.0
382,043 - Pf6N2E2_315 0.22 -1.0

Or see this region's nucleotide sequence