Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_183

Experiment: sodium iodate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_182 and Pf6N2E2_183 are separated by 320 nucleotidesPf6N2E2_183 and Pf6N2E2_184 are separated by 110 nucleotides Pf6N2E2_182 - Two-component hybrid sensor and regulator, at 231,969 to 235,361 _182 Pf6N2E2_183 - Urea ABC transporter, urea binding protein, at 235,682 to 236,926 _183 Pf6N2E2_184 - Urea ABC transporter, permease protein UrtB, at 237,037 to 237,954 _184 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2 3at 234.788 kb on - strand, within Pf6N2E2_182at 234.788 kb on - strand, within Pf6N2E2_182at 234.788 kb on - strand, within Pf6N2E2_182at 234.860 kb on - strand, within Pf6N2E2_182at 234.899 kb on - strand, within Pf6N2E2_182at 234.899 kb on - strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.992 kb on - strand, within Pf6N2E2_182at 235.078 kb on + strandat 235.078 kb on + strandat 235.079 kb on - strandat 235.081 kb on + strandat 235.082 kb on - strandat 235.082 kb on - strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.267 kb on + strandat 235.279 kb on + strandat 235.316 kb on - strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.586 kb on + strandat 235.587 kb on - strandat 235.675 kb on + strandat 235.676 kb on - strandat 235.785 kb on + strandat 235.786 kb on - strandat 235.804 kb on + strandat 236.121 kb on - strand, within Pf6N2E2_183at 236.121 kb on - strand, within Pf6N2E2_183at 236.135 kb on + strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.168 kb on + strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.454 kb on - strand, within Pf6N2E2_183at 236.564 kb on + strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.639 kb on + strandat 236.793 kb on - strand, within Pf6N2E2_183at 236.876 kb on + strandat 236.877 kb on - strandat 236.924 kb on + strandat 236.925 kb on - strandat 237.199 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.257 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.343 kb on + strand, within Pf6N2E2_184at 237.390 kb on - strand, within Pf6N2E2_184at 237.563 kb on - strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.804 kb on + strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
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234,788 - Pf6N2E2_182 0.83 -0.6
234,788 - Pf6N2E2_182 0.83 -1.9
234,788 - Pf6N2E2_182 0.83 -0.5
234,860 - Pf6N2E2_182 0.85 +0.1
234,899 - Pf6N2E2_182 0.86 -0.4
234,899 - Pf6N2E2_182 0.86 -0.8
234,925 + Pf6N2E2_182 0.87 +0.4
234,925 + Pf6N2E2_182 0.87 +1.6
234,925 + Pf6N2E2_182 0.87 -0.8
234,925 + Pf6N2E2_182 0.87 -0.0
234,926 - Pf6N2E2_182 0.87 -0.6
234,926 - Pf6N2E2_182 0.87 +0.2
234,926 - Pf6N2E2_182 0.87 -2.7
234,926 - Pf6N2E2_182 0.87 +0.2
234,992 - Pf6N2E2_182 0.89 -1.5
235,078 + +1.7
235,078 + +0.2
235,079 - +0.5
235,081 + +0.1
235,082 - -0.5
235,082 - -0.2
235,156 + +3.7
235,156 + +1.5
235,267 + -0.1
235,279 + +0.3
235,316 - +0.4
235,564 + +0.2
235,564 + +0.7
235,564 + +0.5
235,564 + +1.1
235,564 + +0.0
235,564 + -0.8
235,564 + +1.8
235,564 + +0.2
235,565 - +1.5
235,565 - +1.3
235,565 - +0.2
235,565 - -0.3
235,565 - +1.5
235,565 - +1.0
235,572 + +0.5
235,572 + -1.2
235,572 + -1.9
235,572 + -0.4
235,572 + -0.0
235,586 + +0.7
235,587 - -0.3
235,675 + -1.2
235,676 - -0.5
235,785 + +0.7
235,786 - +0.6
235,804 + -0.4
236,121 - Pf6N2E2_183 0.35 +1.9
236,121 - Pf6N2E2_183 0.35 +0.1
236,135 + Pf6N2E2_183 0.36 +0.9
236,136 - Pf6N2E2_183 0.36 +0.3
236,136 - Pf6N2E2_183 0.36 +0.8
236,168 + Pf6N2E2_183 0.39 +0.7
236,169 - Pf6N2E2_183 0.39 -0.2
236,169 - Pf6N2E2_183 0.39 +0.3
236,246 + Pf6N2E2_183 0.45 -0.1
236,246 + Pf6N2E2_183 0.45 -0.7
236,247 - Pf6N2E2_183 0.45 +0.8
236,247 - Pf6N2E2_183 0.45 +0.1
236,247 - Pf6N2E2_183 0.45 +1.2
236,264 + Pf6N2E2_183 0.47 -1.2
236,264 + Pf6N2E2_183 0.47 -0.5
236,264 + Pf6N2E2_183 0.47 -0.0
236,264 + Pf6N2E2_183 0.47 +1.5
236,264 + Pf6N2E2_183 0.47 -0.9
236,264 + Pf6N2E2_183 0.47 -0.4
236,265 - Pf6N2E2_183 0.47 +0.5
236,265 - Pf6N2E2_183 0.47 +1.3
236,265 - Pf6N2E2_183 0.47 -1.7
236,266 + Pf6N2E2_183 0.47 -0.8
236,266 + Pf6N2E2_183 0.47 +0.8
236,267 - Pf6N2E2_183 0.47 +0.4
236,267 - Pf6N2E2_183 0.47 -2.0
236,267 - Pf6N2E2_183 0.47 +1.0
236,345 + Pf6N2E2_183 0.53 -0.4
236,345 + Pf6N2E2_183 0.53 -0.5
236,345 + Pf6N2E2_183 0.53 +0.8
236,345 + Pf6N2E2_183 0.53 -0.0
236,346 - Pf6N2E2_183 0.53 +1.3
236,346 - Pf6N2E2_183 0.53 +0.1
236,453 + Pf6N2E2_183 0.62 +0.8
236,453 + Pf6N2E2_183 0.62 +0.2
236,453 + Pf6N2E2_183 0.62 +0.5
236,453 + Pf6N2E2_183 0.62 +1.1
236,454 - Pf6N2E2_183 0.62 +0.7
236,564 + Pf6N2E2_183 0.71 +0.9
236,565 - Pf6N2E2_183 0.71 +1.2
236,565 - Pf6N2E2_183 0.71 -1.2
236,565 - Pf6N2E2_183 0.71 +0.6
236,639 + +2.1
236,793 - Pf6N2E2_183 0.89 +0.3
236,876 + -0.2
236,877 - -0.5
236,924 + +0.3
236,925 - -0.8
237,199 + Pf6N2E2_184 0.18 +1.1
237,208 + Pf6N2E2_184 0.19 +0.8
237,208 + Pf6N2E2_184 0.19 -0.3
237,208 + Pf6N2E2_184 0.19 -1.1
237,208 + Pf6N2E2_184 0.19 +0.4
237,208 + Pf6N2E2_184 0.19 -0.7
237,208 + Pf6N2E2_184 0.19 -0.2
237,209 - Pf6N2E2_184 0.19 +0.2
237,209 - Pf6N2E2_184 0.19 -1.3
237,209 - Pf6N2E2_184 0.19 -0.7
237,209 - Pf6N2E2_184 0.19 +0.4
237,209 - Pf6N2E2_184 0.19 +1.2
237,209 - Pf6N2E2_184 0.19 +0.3
237,209 - Pf6N2E2_184 0.19 -0.4
237,209 - Pf6N2E2_184 0.19 +0.1
237,209 - Pf6N2E2_184 0.19 +0.5
237,209 - Pf6N2E2_184 0.19 +0.4
237,209 - Pf6N2E2_184 0.19 -0.2
237,209 - Pf6N2E2_184 0.19 -0.9
237,209 - Pf6N2E2_184 0.19 -0.2
237,209 - Pf6N2E2_184 0.19 +0.5
237,257 - Pf6N2E2_184 0.24 +0.1
237,260 - Pf6N2E2_184 0.24 -2.1
237,260 - Pf6N2E2_184 0.24 -2.3
237,343 + Pf6N2E2_184 0.33 +1.1
237,390 - Pf6N2E2_184 0.38 +1.2
237,563 - Pf6N2E2_184 0.57 +1.0
237,745 + Pf6N2E2_184 0.77 +0.1
237,745 + Pf6N2E2_184 0.77 +0.3
237,746 - Pf6N2E2_184 0.77 -2.7
237,746 - Pf6N2E2_184 0.77 -1.1
237,746 - Pf6N2E2_184 0.77 -0.2
237,746 - Pf6N2E2_184 0.77 +0.5
237,750 - Pf6N2E2_184 0.78 -1.4
237,750 - Pf6N2E2_184 0.78 +0.0
237,750 - Pf6N2E2_184 0.78 +0.5
237,750 - Pf6N2E2_184 0.78 +0.6
237,804 + Pf6N2E2_184 0.84 +0.4
237,805 - Pf6N2E2_184 0.84 +1.1
237,805 - Pf6N2E2_184 0.84 -0.5
237,805 - Pf6N2E2_184 0.84 +0.8

Or see this region's nucleotide sequence