Experiment: sodium iodate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1582 and Pf6N2E2_1583 overlap by 23 nucleotides Pf6N2E2_1583 and Pf6N2E2_1584 are separated by 117 nucleotides
Pf6N2E2_1582 - HlyD family secretion protein, at 1,851,379 to 1,852,695
_1582
Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457
_1583
Pf6N2E2_1584 - Transcriptional regulator, MarR family / Acetyltransferase (GNAT), at 1,854,575 to 1,855,486
_1584
Position (kb)
1852
1853
1854
1855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1851.835 kb on - strand, within Pf6N2E2_1582 at 1851.881 kb on + strand, within Pf6N2E2_1582 at 1851.881 kb on + strand, within Pf6N2E2_1582 at 1852.118 kb on + strand, within Pf6N2E2_1582 at 1853.013 kb on + strand, within Pf6N2E2_1583 at 1853.013 kb on + strand, within Pf6N2E2_1583 at 1853.092 kb on - strand, within Pf6N2E2_1583 at 1853.547 kb on + strand, within Pf6N2E2_1583 at 1853.547 kb on + strand, within Pf6N2E2_1583 at 1853.566 kb on + strand, within Pf6N2E2_1583 at 1853.676 kb on + strand, within Pf6N2E2_1583 at 1853.723 kb on - strand, within Pf6N2E2_1583 at 1853.875 kb on - strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.025 kb on - strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.165 kb on + strand, within Pf6N2E2_1583 at 1854.166 kb on - strand, within Pf6N2E2_1583 at 1854.245 kb on + strand, within Pf6N2E2_1583 at 1854.295 kb on + strand at 1854.339 kb on + strand at 1854.340 kb on - strand at 1854.351 kb on - strand at 1854.495 kb on - strand at 1854.519 kb on - strand at 1854.776 kb on + strand, within Pf6N2E2_1584 at 1854.882 kb on - strand, within Pf6N2E2_1584 at 1855.006 kb on - strand, within Pf6N2E2_1584 at 1855.129 kb on - strand, within Pf6N2E2_1584 at 1855.172 kb on + strand, within Pf6N2E2_1584 at 1855.173 kb on - strand, within Pf6N2E2_1584 at 1855.412 kb on + strand at 1855.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium iodate 0.005 M remove 1,851,835 - Pf6N2E2_1582 0.35 -0.9 1,851,881 + Pf6N2E2_1582 0.38 +1.9 1,851,881 + Pf6N2E2_1582 0.38 -0.6 1,852,118 + Pf6N2E2_1582 0.56 +0.8 1,853,013 + Pf6N2E2_1583 0.19 +1.7 1,853,013 + Pf6N2E2_1583 0.19 +1.2 1,853,092 - Pf6N2E2_1583 0.23 -0.7 1,853,547 + Pf6N2E2_1583 0.49 -0.1 1,853,547 + Pf6N2E2_1583 0.49 +0.8 1,853,566 + Pf6N2E2_1583 0.50 +0.5 1,853,676 + Pf6N2E2_1583 0.56 +0.2 1,853,723 - Pf6N2E2_1583 0.59 +1.2 1,853,875 - Pf6N2E2_1583 0.67 +0.5 1,854,024 + Pf6N2E2_1583 0.76 +0.3 1,854,024 + Pf6N2E2_1583 0.76 -0.5 1,854,025 - Pf6N2E2_1583 0.76 +1.9 1,854,163 + Pf6N2E2_1583 0.83 -2.7 1,854,163 + Pf6N2E2_1583 0.83 +1.3 1,854,163 + Pf6N2E2_1583 0.83 +0.9 1,854,165 + Pf6N2E2_1583 0.84 +2.5 1,854,166 - Pf6N2E2_1583 0.84 +1.7 1,854,245 + Pf6N2E2_1583 0.88 +0.6 1,854,295 + -1.8 1,854,339 + +0.3 1,854,340 - -0.1 1,854,351 - -0.1 1,854,495 - -0.7 1,854,519 - -0.3 1,854,776 + Pf6N2E2_1584 0.22 +0.1 1,854,882 - Pf6N2E2_1584 0.34 +0.5 1,855,006 - Pf6N2E2_1584 0.47 -0.1 1,855,129 - Pf6N2E2_1584 0.61 +2.2 1,855,172 + Pf6N2E2_1584 0.65 -0.3 1,855,173 - Pf6N2E2_1584 0.66 +0.9 1,855,412 + +0.5 1,855,413 - -1.4
Or see this region's nucleotide sequence