Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_140

Experiment: sodium iodate 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_139 and Pf6N2E2_140 are separated by 85 nucleotidesPf6N2E2_140 and Pf6N2E2_141 are separated by 903 nucleotides Pf6N2E2_139 - Two-component response regulator, at 189,030 to 189,977 _139 Pf6N2E2_140 - Glutamate carboxypeptidase (EC 3.4.17.11), at 190,063 to 191,301 _140 Pf6N2E2_141 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 192,205 to 193,539 _141 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 189.066 kb on + strandat 189.118 kb on + strandat 189.119 kb on - strandat 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.336 kb on + strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.337 kb on - strand, within Pf6N2E2_139at 189.402 kb on + strand, within Pf6N2E2_139at 189.402 kb on + strand, within Pf6N2E2_139at 189.402 kb on + strand, within Pf6N2E2_139at 189.403 kb on - strand, within Pf6N2E2_139at 189.403 kb on - strand, within Pf6N2E2_139at 189.403 kb on - strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.600 kb on + strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.601 kb on - strand, within Pf6N2E2_139at 189.786 kb on + strand, within Pf6N2E2_139at 189.786 kb on + strand, within Pf6N2E2_139at 189.787 kb on - strand, within Pf6N2E2_139at 189.821 kb on + strand, within Pf6N2E2_139at 189.821 kb on + strand, within Pf6N2E2_139at 189.822 kb on - strand, within Pf6N2E2_139at 189.850 kb on - strand, within Pf6N2E2_139at 189.894 kb on + strandat 189.894 kb on + strandat 189.995 kb on + strandat 189.996 kb on - strandat 190.187 kb on - strand, within Pf6N2E2_140at 190.187 kb on - strand, within Pf6N2E2_140at 190.246 kb on + strand, within Pf6N2E2_140at 190.246 kb on + strand, within Pf6N2E2_140at 190.246 kb on + strand, within Pf6N2E2_140at 190.247 kb on - strand, within Pf6N2E2_140at 190.247 kb on - strand, within Pf6N2E2_140at 190.247 kb on - strand, within Pf6N2E2_140at 190.247 kb on - strand, within Pf6N2E2_140at 190.275 kb on + strand, within Pf6N2E2_140at 190.327 kb on - strand, within Pf6N2E2_140at 190.516 kb on + strand, within Pf6N2E2_140at 190.517 kb on - strand, within Pf6N2E2_140at 190.517 kb on - strand, within Pf6N2E2_140at 190.556 kb on - strand, within Pf6N2E2_140at 190.566 kb on + strand, within Pf6N2E2_140at 190.566 kb on + strand, within Pf6N2E2_140at 190.567 kb on - strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.092 kb on + strand, within Pf6N2E2_140at 191.093 kb on + strand, within Pf6N2E2_140at 191.093 kb on - strand, within Pf6N2E2_140at 191.165 kb on + strand, within Pf6N2E2_140at 191.227 kb on + strandat 191.227 kb on + strandat 191.228 kb on - strandat 191.260 kb on + strandat 191.307 kb on + strandat 191.307 kb on + strandat 191.308 kb on - strandat 191.458 kb on - strandat 191.464 kb on - strandat 191.468 kb on - strandat 191.468 kb on - strandat 191.468 kb on - strandat 191.817 kb on + strandat 191.817 kb on + strandat 191.818 kb on - strandat 191.818 kb on - strandat 191.818 kb on - strandat 191.958 kb on - strandat 191.958 kb on - strandat 191.958 kb on - strandat 191.964 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
remove
189,066 + +1.0
189,118 + -0.7
189,119 - +0.6
189,336 + Pf6N2E2_139 0.32 -1.1
189,336 + Pf6N2E2_139 0.32 -0.0
189,336 + Pf6N2E2_139 0.32 +0.7
189,336 + Pf6N2E2_139 0.32 +1.3
189,336 + Pf6N2E2_139 0.32 +0.4
189,336 + Pf6N2E2_139 0.32 -2.0
189,336 + Pf6N2E2_139 0.32 -0.1
189,336 + Pf6N2E2_139 0.32 -0.3
189,337 - Pf6N2E2_139 0.32 -0.0
189,337 - Pf6N2E2_139 0.32 -0.4
189,337 - Pf6N2E2_139 0.32 +0.2
189,337 - Pf6N2E2_139 0.32 +0.9
189,337 - Pf6N2E2_139 0.32 -1.2
189,337 - Pf6N2E2_139 0.32 +1.5
189,337 - Pf6N2E2_139 0.32 +1.1
189,337 - Pf6N2E2_139 0.32 +0.3
189,337 - Pf6N2E2_139 0.32 -0.8
189,337 - Pf6N2E2_139 0.32 -0.2
189,337 - Pf6N2E2_139 0.32 +0.5
189,337 - Pf6N2E2_139 0.32 -0.2
189,402 + Pf6N2E2_139 0.39 +0.0
189,402 + Pf6N2E2_139 0.39 +0.2
189,402 + Pf6N2E2_139 0.39 +0.2
189,403 - Pf6N2E2_139 0.39 +0.1
189,403 - Pf6N2E2_139 0.39 -1.2
189,403 - Pf6N2E2_139 0.39 +1.8
189,600 + Pf6N2E2_139 0.60 -0.3
189,600 + Pf6N2E2_139 0.60 -0.9
189,600 + Pf6N2E2_139 0.60 -0.4
189,600 + Pf6N2E2_139 0.60 +0.6
189,600 + Pf6N2E2_139 0.60 -0.2
189,600 + Pf6N2E2_139 0.60 -1.2
189,601 - Pf6N2E2_139 0.60 +0.9
189,601 - Pf6N2E2_139 0.60 +2.1
189,601 - Pf6N2E2_139 0.60 +0.6
189,601 - Pf6N2E2_139 0.60 -1.8
189,601 - Pf6N2E2_139 0.60 -1.4
189,601 - Pf6N2E2_139 0.60 -0.9
189,601 - Pf6N2E2_139 0.60 -1.6
189,601 - Pf6N2E2_139 0.60 +1.7
189,601 - Pf6N2E2_139 0.60 +0.8
189,601 - Pf6N2E2_139 0.60 +0.9
189,601 - Pf6N2E2_139 0.60 +0.2
189,601 - Pf6N2E2_139 0.60 -0.7
189,601 - Pf6N2E2_139 0.60 +0.8
189,601 - Pf6N2E2_139 0.60 +0.9
189,601 - Pf6N2E2_139 0.60 +0.3
189,601 - Pf6N2E2_139 0.60 +0.4
189,601 - Pf6N2E2_139 0.60 +0.6
189,601 - Pf6N2E2_139 0.60 +0.8
189,601 - Pf6N2E2_139 0.60 -0.7
189,786 + Pf6N2E2_139 0.80 -0.8
189,786 + Pf6N2E2_139 0.80 +1.5
189,787 - Pf6N2E2_139 0.80 -0.4
189,821 + Pf6N2E2_139 0.83 +0.6
189,821 + Pf6N2E2_139 0.83 +0.9
189,822 - Pf6N2E2_139 0.84 -0.9
189,850 - Pf6N2E2_139 0.86 +0.3
189,894 + -0.2
189,894 + +0.3
189,995 + +0.8
189,996 - +0.8
190,187 - Pf6N2E2_140 0.10 -0.2
190,187 - Pf6N2E2_140 0.10 +0.2
190,246 + Pf6N2E2_140 0.15 +1.5
190,246 + Pf6N2E2_140 0.15 -0.0
190,246 + Pf6N2E2_140 0.15 +0.8
190,247 - Pf6N2E2_140 0.15 +0.5
190,247 - Pf6N2E2_140 0.15 +1.7
190,247 - Pf6N2E2_140 0.15 +1.1
190,247 - Pf6N2E2_140 0.15 -0.3
190,275 + Pf6N2E2_140 0.17 -1.8
190,327 - Pf6N2E2_140 0.21 +1.1
190,516 + Pf6N2E2_140 0.37 +0.8
190,517 - Pf6N2E2_140 0.37 -1.9
190,517 - Pf6N2E2_140 0.37 +0.8
190,556 - Pf6N2E2_140 0.40 +2.1
190,566 + Pf6N2E2_140 0.41 +1.0
190,566 + Pf6N2E2_140 0.41 -1.6
190,567 - Pf6N2E2_140 0.41 -0.0
191,092 + Pf6N2E2_140 0.83 -0.5
191,092 + Pf6N2E2_140 0.83 +1.1
191,092 + Pf6N2E2_140 0.83 +0.6
191,092 + Pf6N2E2_140 0.83 -1.2
191,092 + Pf6N2E2_140 0.83 +0.7
191,092 + Pf6N2E2_140 0.83 +0.6
191,092 + Pf6N2E2_140 0.83 +0.7
191,092 + Pf6N2E2_140 0.83 +1.3
191,093 + Pf6N2E2_140 0.83 -2.0
191,093 - Pf6N2E2_140 0.83 +1.4
191,165 + Pf6N2E2_140 0.89 -0.2
191,227 + +0.8
191,227 + -0.6
191,228 - +2.3
191,260 + -0.9
191,307 + +0.1
191,307 + -0.8
191,308 - -0.0
191,458 - +0.2
191,464 - -2.6
191,468 - -0.0
191,468 - +0.9
191,468 - +0.4
191,817 + -0.0
191,817 + +0.3
191,818 - +0.9
191,818 - -1.1
191,818 - -0.7
191,958 - -0.3
191,958 - -0.4
191,958 - +1.6
191,964 - +0.7

Or see this region's nucleotide sequence