Strain Fitness in Pantoea sp. MT58 around IAI47_12990

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,747,469	+		IAI47_12980	0.40	+0.3
2,747,521	-		IAI47_12980	0.46	-0.2
2,747,521	-		IAI47_12980	0.46	+0.0
2,747,521	-		IAI47_12980	0.46	+1.1
2,747,521	-		IAI47_12980	0.46	-1.0
2,747,759	+		IAI47_12980	0.75	-2.6
2,747,759	+		IAI47_12980	0.75	-1.7
2,747,760	-		IAI47_12980	0.75	-0.5
2,747,760	-		IAI47_12980	0.75	+0.5
2,747,821	-		IAI47_12980	0.83	+1.2
2,747,821	-		IAI47_12980	0.83	+1.0
2,747,822	+		IAI47_12980	0.83	-0.5
2,747,822	+		IAI47_12980	0.83	-1.6
2,747,823	-		IAI47_12980	0.83	-1.0
2,747,823	-		IAI47_12980	0.83	-1.0
2,747,823	-		IAI47_12980	0.83	-0.5
2,747,823	-		IAI47_12980	0.83	-0.7
2,747,841	+		IAI47_12980	0.85	-1.3
2,747,842	-		IAI47_12980	0.85	-1.2
2,747,905	+				+2.9
2,747,942	-				+0.6
2,748,032	-		IAI47_12985	0.22	+0.9
2,748,116	+		IAI47_12985	0.48	+0.0
2,748,117	-		IAI47_12985	0.49	+0.8
2,748,133	+		IAI47_12985	0.54	-1.5
2,748,133	+		IAI47_12985	0.54	-0.0
2,748,232	+		IAI47_12985	0.84	-0.5
2,748,232	+		IAI47_12985	0.84	+0.0
2,748,232	+		IAI47_12985	0.84	-1.9
2,748,233	-		IAI47_12985	0.85	+1.9
2,748,233	-		IAI47_12985	0.85	+0.4
2,748,233	-		IAI47_12985	0.85	-0.1
2,748,335	+				+0.7
2,748,335	+				+1.2
2,748,335	+				+1.4
2,748,335	+				-1.8
2,748,335	+				-0.7
2,748,335	+				-0.4
2,748,335	+				+2.7
2,748,335	+				+2.1
2,748,335	+				+0.4
2,748,335	+				-2.5
2,748,335	+				+1.2
2,748,336	-				+0.0
2,748,336	-				+1.8
2,748,336	-				+1.4
2,748,336	-				+1.0
2,748,336	-				+1.0
2,748,336	-				+0.9
2,748,336	-				-1.3
2,748,336	-				-0.5
2,748,336	-				+0.6
2,748,336	-				+0.4
2,748,336	-				+0.5
2,748,336	-				-1.1
2,748,337	+				-0.6
2,748,337	+				+0.8
2,748,337	+				-0.5
2,748,337	+				+0.9
2,748,337	+				+0.0
2,748,337	+				-0.6
2,748,337	+				+2.0
2,748,338	-				-0.0
2,748,338	-				+0.8
2,748,338	-				+0.6
2,748,338	-				+2.2
2,748,338	-				-0.5
2,748,338	-				+0.8
2,748,338	-				+3.4
2,748,338	-				-0.1
2,748,338	-				+0.0
2,748,338	-				+0.2
2,748,342	+				+1.4
2,748,342	+				-2.0
2,748,342	+				+0.4
2,748,342	+				+2.7
2,748,342	+				-2.2
2,748,342	+				-0.2
2,748,342	+				+0.2
2,748,343	-				-0.8
2,748,343	-				+1.5
2,748,343	-				-1.0
2,748,343	-				+1.0
2,748,343	-				-0.1
2,748,343	-				+2.5
2,748,343	-				-1.7
2,748,343	-				-2.3
2,748,347	+				+0.0
2,748,348	-				+1.2
2,748,348	-				-1.3
2,748,374	+				-2.2
2,748,375	-				+0.2
2,748,443	+		IAI47_12990	0.10	+0.8
2,748,443	+		IAI47_12990	0.10	-0.4
2,748,470	+		IAI47_12990	0.15	-0.9
2,748,470	+		IAI47_12990	0.15	+3.0
2,748,470	+		IAI47_12990	0.15	-1.1
2,748,531	+		IAI47_12990	0.27	+1.5
2,748,601	-		IAI47_12990	0.40	+1.8
2,748,601	-		IAI47_12990	0.40	+1.0
2,748,618	+		IAI47_12990	0.43	-0.4
2,748,618	+		IAI47_12990	0.43	-0.2
2,748,619	-		IAI47_12990	0.43	-0.9
2,748,619	-		IAI47_12990	0.43	+0.9
2,748,731	+		IAI47_12990	0.64	-1.5
2,748,731	+		IAI47_12990	0.64	+2.0
2,748,731	+		IAI47_12990	0.64	+0.1
2,748,731	+		IAI47_12990	0.64	+0.3
2,748,731	+		IAI47_12990	0.64	-0.7
2,748,731	+		IAI47_12990	0.64	+0.3
2,748,732	-		IAI47_12990	0.64	-0.2
2,748,732	-		IAI47_12990	0.64	+4.5
2,748,732	-		IAI47_12990	0.64	+0.8
2,748,732	-		IAI47_12990	0.64	-2.5
2,748,732	-		IAI47_12990	0.64	+0.9
2,748,732	-		IAI47_12990	0.64	+0.0
2,748,732	-		IAI47_12990	0.64	+1.3
2,748,734	+		IAI47_12990	0.64	+0.0
2,748,735	-		IAI47_12990	0.64	-0.2
2,748,858	+		IAI47_12990	0.87	-1.7
2,748,858	+		IAI47_12990	0.87	-0.9
2,748,858	+		IAI47_12990	0.87	+1.6
2,748,859	-		IAI47_12990	0.87	+1.7
2,748,859	-		IAI47_12990	0.87	+0.6
2,748,924	+				+0.3
2,748,924	+				-0.4
2,748,932	+				+1.8
2,748,933	-				-0.4
2,748,938	-				+0.0
2,748,944	-				-1.1
2,749,032	+				+0.8
2,749,032	+				+0.5
2,749,032	+				+2.3
2,749,032	+				-1.5
2,749,032	+				-1.0
2,749,033	-				+0.5
2,749,033	-				+0.3
2,749,033	-				+0.3
2,749,033	-				-0.2
2,749,040	+				+1.2
2,749,055	+				-2.4
2,749,055	+				-0.5
2,749,055	+				-2.7
2,749,055	+				+0.7
2,749,055	+				-0.4
2,749,055	+				+1.0
2,749,055	+				-0.2
2,749,055	+				+0.5
2,749,055	+				+1.5
2,749,055	+				-0.5
2,749,055	+				+2.2
2,749,055	+				+0.3
2,749,055	+				-0.4
2,749,055	+				-1.8
2,749,056	-				+0.2
2,749,056	-				+1.1
2,749,056	-				+0.9
2,749,056	-				+0.4
2,749,056	-				-1.7
2,749,056	-				-0.6
2,749,056	-				+1.0
2,749,056	-				+0.8
2,749,056	-				-1.2
2,749,086	+				-0.7
2,749,087	-				-0.5
2,749,094	+				-0.7
2,749,095	-				+0.7
2,749,099	-				-0.2
2,749,099	-				-0.7
2,749,112	+				+1.1
2,749,113	-				-1.0
2,749,127	+				+3.0
2,749,130	+				-0.9
2,749,130	+				+0.5
2,749,130	+				+0.3
2,749,130	+				-0.2
2,749,130	+				-1.1
2,749,130	+				+0.0
2,749,130	+				-2.0
2,749,130	+				+0.5
2,749,131	-				+1.9
2,749,131	-				-1.2
2,749,131	-				-0.4
2,749,131	-				-1.5
2,749,131	-				+1.6
2,749,131	-				-1.5
2,749,134	+				+0.8
2,749,135	-				+0.0
2,749,135	-				+0.0
2,749,156	-				+2.3
2,749,172	+				-0.4
2,749,173	-				+1.3
2,749,173	-				+0.8
2,749,173	-				+0.3
2,749,183	+				+1.5
2,749,183	+				+1.5
2,749,183	+				-0.2
2,749,183	+				+0.1
2,749,183	+				+0.0
2,749,183	+				+0.3
2,749,183	+				-1.7
2,749,183	+				+3.2
2,749,183	+				-1.1
2,749,183	+				-1.5
2,749,183	+				-1.4
2,749,184	-				+0.8
2,749,184	-				-1.4
2,749,184	-				-2.0
2,749,184	-				-1.0
2,749,184	-				+0.1
2,749,184	-				+0.3
2,749,244	+		IAI47_12995	0.13	-1.5
2,749,245	-		IAI47_12995	0.13	+0.3
2,749,293	+		IAI47_12995	0.20	+1.9
2,749,420	+		IAI47_12995	0.37	-0.5
2,749,420	+		IAI47_12995	0.37	+1.5
2,749,420	+		IAI47_12995	0.37	-2.9
2,749,420	+		IAI47_12995	0.37	+1.7
2,749,421	-		IAI47_12995	0.37	+0.0
2,749,421	-		IAI47_12995	0.37	+0.8
2,749,421	-		IAI47_12995	0.37	-1.9
2,749,422	+		IAI47_12995	0.37	+0.4
2,749,422	+		IAI47_12995	0.37	-0.0
2,749,422	+		IAI47_12995	0.37	+0.3
2,749,422	+		IAI47_12995	0.37	+0.2
2,749,423	-		IAI47_12995	0.37	+1.8
2,749,423	-		IAI47_12995	0.37	-1.8
2,749,423	-		IAI47_12995	0.37	+0.0
2,749,423	-		IAI47_12995	0.37	-0.2
2,749,423	-		IAI47_12995	0.37	-2.1
2,749,423	-		IAI47_12995	0.37	+0.2
2,749,423	-		IAI47_12995	0.37	+0.5
2,749,549	+		IAI47_12995	0.55	-0.2
2,749,549	+		IAI47_12995	0.55	-1.6
2,749,550	-		IAI47_12995	0.55	-0.6
2,749,695	+		IAI47_12995	0.75	-0.6
2,749,695	+		IAI47_12995	0.75	+0.3
2,749,695	+		IAI47_12995	0.75	-0.7
2,749,696	-		IAI47_12995	0.75	+2.5
2,749,696	-		IAI47_12995	0.75	+0.0
2,749,764	+		IAI47_12995	0.84	+0.7
2,749,764	+		IAI47_12995	0.84	-0.0
2,749,764	+		IAI47_12995	0.84	-1.2
2,749,765	-		IAI47_12995	0.84	+1.5
2,749,765	-		IAI47_12995	0.84	-0.5
2,749,786	+		IAI47_12995	0.87	+1.7
2,749,786	+		IAI47_12995	0.87	-0.7
2,749,786	+		IAI47_12995	0.87	-2.0
2,749,787	-		IAI47_12995	0.87	+4.3
2,749,787	-		IAI47_12995	0.87	+0.3
2,749,787	-		IAI47_12995	0.87	-0.8
2,749,787	-		IAI47_12995	0.87	-1.2
2,749,787	-		IAI47_12995	0.87	+0.8
2,749,833	+				+3.1
2,749,834	-				-1.6
2,749,865	-				+0.8
2,749,876	+				+0.5
2,749,876	+				+0.5
2,749,876	+				+0.0
2,749,877	-				-1.0
2,749,907	+				-2.5
2,749,907	+				-1.5