Strain Fitness in Pantoea sp. MT58 around IAI47_10135

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,144,622	+		IAI47_10130	0.25	+0.7
2,144,623	-		IAI47_10130	0.25	-0.6
2,144,675	-		IAI47_10130	0.29	-1.1
2,144,718	+		IAI47_10130	0.32	-0.2
2,144,718	+		IAI47_10130	0.32	-0.2
2,144,719	-		IAI47_10130	0.32	-1.6
2,144,757	+		IAI47_10130	0.35	+1.1
2,144,757	+		IAI47_10130	0.35	+0.2
2,144,757	+		IAI47_10130	0.35	+0.3
2,144,758	-		IAI47_10130	0.35	+0.5
2,144,758	-		IAI47_10130	0.35	-0.2
2,144,796	-		IAI47_10130	0.38	-2.2
2,144,796	-		IAI47_10130	0.38	-0.8
2,144,796	-		IAI47_10130	0.38	+0.1
2,144,796	-		IAI47_10130	0.38	-1.5
2,144,820	-		IAI47_10130	0.40	+1.4
2,144,820	-		IAI47_10130	0.40	+0.1
2,144,871	-		IAI47_10130	0.44	+0.8
2,144,906	+		IAI47_10130	0.46	+0.9
2,144,906	+		IAI47_10130	0.46	+0.1
2,144,906	+		IAI47_10130	0.46	+0.1
2,144,907	-		IAI47_10130	0.46	+0.1
2,144,914	+		IAI47_10130	0.47	+1.0
2,144,914	+		IAI47_10130	0.47	-2.0
2,144,914	+		IAI47_10130	0.47	-1.1
2,144,915	-		IAI47_10130	0.47	+0.5
2,144,915	-		IAI47_10130	0.47	+0.4
2,144,915	-		IAI47_10130	0.47	+0.2
2,144,915	-		IAI47_10130	0.47	+1.8
2,144,915	-		IAI47_10130	0.47	+0.3
2,144,915	-		IAI47_10130	0.47	-0.9
2,145,002	+		IAI47_10130	0.54	-0.6
2,145,002	+		IAI47_10130	0.54	-1.2
2,145,003	-		IAI47_10130	0.54	+1.1
2,145,003	-		IAI47_10130	0.54	-1.8
2,145,075	+		IAI47_10130	0.59	-0.0
2,145,076	-		IAI47_10130	0.59	-0.5
2,145,145	+		IAI47_10130	0.65	+1.9
2,145,145	+		IAI47_10130	0.65	-1.8
2,145,146	-		IAI47_10130	0.65	-1.1
2,145,162	-		IAI47_10130	0.66	-0.2
2,145,206	+		IAI47_10130	0.69	+1.4
2,145,207	-		IAI47_10130	0.69	+1.3
2,145,214	+		IAI47_10130	0.70	+1.7
2,145,215	-		IAI47_10130	0.70	+1.8
2,145,215	-		IAI47_10130	0.70	-0.5
2,145,215	-		IAI47_10130	0.70	-0.2
2,145,252	+		IAI47_10130	0.73	+1.9
2,145,252	+		IAI47_10130	0.73	+2.5
2,145,252	+		IAI47_10130	0.73	+0.4
2,145,253	-		IAI47_10130	0.73	+0.1
2,145,253	-		IAI47_10130	0.73	+1.4
2,145,253	-		IAI47_10130	0.73	-0.1
2,145,339	+		IAI47_10130	0.80	-1.8
2,145,339	+		IAI47_10130	0.80	+1.5
2,145,374	+		IAI47_10130	0.82	+0.4
2,145,414	+		IAI47_10130	0.85	+0.8
2,145,414	+		IAI47_10130	0.85	+0.5
2,145,414	+		IAI47_10130	0.85	-0.2
2,145,414	+		IAI47_10130	0.85	-2.5
2,145,416	+		IAI47_10130	0.85	-0.5
2,145,416	+		IAI47_10130	0.85	+1.3
2,145,417	-		IAI47_10130	0.86	+0.5
2,145,417	-		IAI47_10130	0.86	-0.5
2,145,446	+		IAI47_10130	0.88	+1.1
2,145,549	+				-0.2
2,145,549	+				+1.2
2,145,549	+				+0.0
2,145,549	+				-1.3
2,145,549	+				-0.9
2,145,549	+				-1.2
2,145,550	-				-1.1
2,145,550	-				-1.6
2,145,550	-				-1.2
2,145,550	-				-0.9
2,145,550	-				+0.3
2,145,555	+				+0.7
2,145,556	-				+0.4
2,145,600	-				-0.2
2,145,640	+				+0.1
2,145,640	+				-2.5
2,145,640	+				-0.5
2,145,640	+				-0.0
2,145,641	-				+2.1
2,145,641	-				-1.8
2,145,641	-				-1.6
2,145,657	+				-1.7
2,145,658	-				-0.4
2,145,658	-				+0.5
2,145,701	+		IAI47_10135	0.10	+2.1
2,145,720	+		IAI47_10135	0.13	+1.0
2,145,735	+		IAI47_10135	0.15	+1.5
2,145,804	+		IAI47_10135	0.23	-0.9
2,145,960	+		IAI47_10135	0.42	-1.9
2,145,961	-		IAI47_10135	0.43	+1.3
2,145,982	-		IAI47_10135	0.45	-0.8
2,146,008	+		IAI47_10135	0.48	+1.8
2,146,009	-		IAI47_10135	0.49	+3.4
2,146,009	-		IAI47_10135	0.49	+1.8
2,146,040	-		IAI47_10135	0.52	+0.4
2,146,063	+		IAI47_10135	0.55	-0.2
2,146,063	+		IAI47_10135	0.55	+1.0
2,146,063	+		IAI47_10135	0.55	+1.1
2,146,063	+		IAI47_10135	0.55	-0.9
2,146,063	+		IAI47_10135	0.55	-0.7
2,146,063	+		IAI47_10135	0.55	+2.3
2,146,064	-		IAI47_10135	0.55	-0.2
2,146,064	-		IAI47_10135	0.55	+0.5
2,146,064	-		IAI47_10135	0.55	+0.4
2,146,064	-		IAI47_10135	0.55	+0.9
2,146,064	-		IAI47_10135	0.55	-0.1
2,146,064	-		IAI47_10135	0.55	+1.1
2,146,124	+		IAI47_10135	0.63	+2.9
2,146,167	+		IAI47_10135	0.68	-0.2
2,146,171	+		IAI47_10135	0.69	-1.6
2,146,171	+		IAI47_10135	0.69	-0.2
2,146,171	+		IAI47_10135	0.69	+1.6
2,146,171	+		IAI47_10135	0.69	-1.1
2,146,172	-		IAI47_10135	0.69	+1.8
2,146,172	-		IAI47_10135	0.69	-1.2
2,146,172	-		IAI47_10135	0.69	+1.1
2,146,255	+		IAI47_10135	0.79	-1.1
2,146,255	+		IAI47_10135	0.79	-0.9
2,146,255	+		IAI47_10135	0.79	+0.8
2,146,255	+		IAI47_10135	0.79	+1.4
2,146,256	-		IAI47_10135	0.79	+0.6
2,146,256	-		IAI47_10135	0.79	+2.7
2,146,256	-		IAI47_10135	0.79	+1.7
2,146,256	-		IAI47_10135	0.79	+0.7
2,146,256	-		IAI47_10135	0.79	-0.9
2,146,256	-		IAI47_10135	0.79	-0.9
2,146,413	+				+0.5
2,146,413	+				-0.2
2,146,413	+				-2.0
2,146,414	-				+0.3
2,146,414	-				-1.3
2,146,414	-				-0.2
2,146,414	-				+4.0
2,146,414	-				+2.7
2,146,450	+				-1.3
2,146,451	-				+2.1
2,146,545	+		IAI47_10140	0.16	-0.7
2,146,545	+		IAI47_10140	0.16	+1.4
2,146,545	+		IAI47_10140	0.16	+0.5
2,146,609	+		IAI47_10140	0.23	-0.7
2,146,609	+		IAI47_10140	0.23	-1.7
2,146,609	+		IAI47_10140	0.23	-1.1
2,146,609	+		IAI47_10140	0.23	-1.5
2,146,609	+		IAI47_10140	0.23	-1.6
2,146,609	+		IAI47_10140	0.23	-0.8
2,146,609	+		IAI47_10140	0.23	+1.4
2,146,609	+		IAI47_10140	0.23	+3.1
2,146,609	+		IAI47_10140	0.23	+0.1
2,146,609	+		IAI47_10140	0.23	-0.3
2,146,609	+		IAI47_10140	0.23	-0.2
2,146,609	+		IAI47_10140	0.23	-0.7
2,146,609	+		IAI47_10140	0.23	-2.0
2,146,610	-		IAI47_10140	0.23	+0.9
2,146,610	-		IAI47_10140	0.23	+0.3
2,146,610	-		IAI47_10140	0.23	-0.9
2,146,610	-		IAI47_10140	0.23	-0.2
2,146,610	-		IAI47_10140	0.23	+0.4
2,146,610	-		IAI47_10140	0.23	+0.5
2,146,610	-		IAI47_10140	0.23	+1.5
2,146,610	-		IAI47_10140	0.23	-1.5
2,146,654	+		IAI47_10140	0.28	+0.1
2,146,654	+		IAI47_10140	0.28	-1.1
2,146,655	-		IAI47_10140	0.28	-0.9
2,146,655	-		IAI47_10140	0.28	-0.3
2,146,685	-		IAI47_10140	0.32	-0.5
2,146,685	-		IAI47_10140	0.32	-0.5
2,146,702	+		IAI47_10140	0.34	-0.5
2,146,728	+		IAI47_10140	0.36	-0.1
2,146,729	-		IAI47_10140	0.37	+1.3
2,146,763	+		IAI47_10140	0.40	-1.0
2,146,794	+		IAI47_10140	0.44	-0.2
2,146,794	+		IAI47_10140	0.44	+1.8
2,146,794	+		IAI47_10140	0.44	+0.3
2,146,794	+		IAI47_10140	0.44	+1.5
2,146,794	+		IAI47_10140	0.44	+1.9
2,146,795	-		IAI47_10140	0.44	-2.3
2,146,795	-		IAI47_10140	0.44	-0.9
2,146,795	-		IAI47_10140	0.44	+1.1
2,146,890	+		IAI47_10140	0.54	-0.9
2,146,890	+		IAI47_10140	0.54	-1.7
2,146,891	-		IAI47_10140	0.55	+0.5
2,146,891	-		IAI47_10140	0.55	+0.9
2,146,891	-		IAI47_10140	0.55	+1.5
2,146,977	+		IAI47_10140	0.64	-0.5
2,146,977	+		IAI47_10140	0.64	+1.3
2,146,977	+		IAI47_10140	0.64	+3.1
2,146,978	-		IAI47_10140	0.64	+0.4
2,146,978	-		IAI47_10140	0.64	+1.1
2,146,980	+		IAI47_10140	0.64	-0.9
2,146,980	+		IAI47_10140	0.64	-0.9
2,146,981	-		IAI47_10140	0.65	+0.2
2,146,981	-		IAI47_10140	0.65	-0.9
2,146,981	-		IAI47_10140	0.65	+0.0
2,147,009	-		IAI47_10140	0.68	+0.3
2,147,152	+		IAI47_10140	0.84	+0.9
2,147,153	-		IAI47_10140	0.84	-1.3
2,147,153	-		IAI47_10140	0.84	-1.3
2,147,153	-		IAI47_10140	0.84	+0.1
2,147,153	-		IAI47_10140	0.84	-2.0
2,147,153	-		IAI47_10140	0.84	-1.6
2,147,153	-		IAI47_10140	0.84	-0.5
2,147,156	-		IAI47_10140	0.84	+0.9