Strain Fitness in Pantoea sp. MT58 around IAI47_09830

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,079,551	+				-2.1
2,079,552	-				-2.5
2,079,552	-				-2.0
2,079,552	-				-0.1
2,079,557	-				+0.7
2,079,562	+				+0.8
2,079,563	-				-1.3
2,079,563	-				+0.6
2,079,563	-				+1.4
2,079,563	-				-0.2
2,079,563	-				-0.7
2,079,641	+				-0.6
2,079,697	+				+1.8
2,079,697	+				+1.8
2,079,697	+				+0.1
2,079,697	+				+0.0
2,079,697	+				+1.1
2,079,697	+				-0.5
2,079,698	-				+0.4
2,079,698	-				-0.2
2,079,698	-				+0.1
2,079,698	-				-1.6
2,079,698	-				-1.3
2,079,711	-				+1.3
2,079,769	-		IAI47_09825	0.10	-1.3
2,079,769	-		IAI47_09825	0.10	-0.0
2,079,870	+		IAI47_09825	0.23	-0.1
2,079,870	+		IAI47_09825	0.23	-0.2
2,080,013	+		IAI47_09825	0.41	+0.6
2,080,013	+		IAI47_09825	0.41	-0.2
2,080,013	+		IAI47_09825	0.41	+2.5
2,080,014	-		IAI47_09825	0.42	+2.7
2,080,014	-		IAI47_09825	0.42	-0.7
2,080,133	+		IAI47_09825	0.57	+1.7
2,080,133	+		IAI47_09825	0.57	+1.6
2,080,134	-		IAI47_09825	0.57	+0.7
2,080,192	+		IAI47_09825	0.64	+0.5
2,080,192	+		IAI47_09825	0.64	-0.5
2,080,192	+		IAI47_09825	0.64	+2.5
2,080,193	-		IAI47_09825	0.65	+0.7
2,080,193	-		IAI47_09825	0.65	-0.1
2,080,193	-		IAI47_09825	0.65	+0.4
2,080,193	-		IAI47_09825	0.65	+2.1
2,080,197	+		IAI47_09825	0.65	+0.5
2,080,197	+		IAI47_09825	0.65	-1.7
2,080,197	+		IAI47_09825	0.65	-0.5
2,080,198	-		IAI47_09825	0.65	-0.5
2,080,198	-		IAI47_09825	0.65	+1.5
2,080,198	-		IAI47_09825	0.65	+0.3
2,080,198	-		IAI47_09825	0.65	+4.4
2,080,198	-		IAI47_09825	0.65	+1.8
2,080,198	-		IAI47_09825	0.65	-0.9
2,080,198	-		IAI47_09825	0.65	-2.1
2,080,198	-		IAI47_09825	0.65	+1.5
2,080,198	-		IAI47_09825	0.65	-0.7
2,080,200	+		IAI47_09825	0.66	-1.8
2,080,201	-		IAI47_09825	0.66	-0.5
2,080,201	-		IAI47_09825	0.66	+1.9
2,080,281	-		IAI47_09825	0.76	-0.2
2,080,281	-		IAI47_09825	0.76	-1.1
2,080,389	+		IAI47_09825	0.90	+1.1
2,080,458	+				+0.9
2,080,458	+				+0.5
2,080,458	+				-1.5
2,080,458	+				+0.1
2,080,459	-				+1.1
2,080,459	-				-1.2
2,080,459	-				+0.1
2,080,459	-				-1.2
2,080,459	-				+0.1
2,080,556	+				-0.9
2,080,557	-				+1.1
2,080,575	+				-0.2
2,080,576	-				+0.5
2,080,576	-				-0.9
2,080,576	-				-0.9
2,080,576	-				+0.1
2,080,601	-				-0.2
2,080,601	-				+1.1
2,080,601	-				-1.1
2,080,701	-				+2.4
2,080,701	-				+1.1
2,080,782	-		IAI47_09830	0.12	-0.7
2,080,791	+		IAI47_09830	0.13	+1.2
2,080,792	-		IAI47_09830	0.13	+0.1
2,080,792	-		IAI47_09830	0.13	-1.1
2,080,792	-		IAI47_09830	0.13	+2.1
2,080,792	-		IAI47_09830	0.13	-0.8
2,080,816	+		IAI47_09830	0.14	+1.8
2,080,817	-		IAI47_09830	0.14	-0.5
2,080,817	-		IAI47_09830	0.14	+0.3
2,080,817	-		IAI47_09830	0.14	-0.5
2,080,891	-		IAI47_09830	0.18	-0.0
2,080,891	-		IAI47_09830	0.18	-0.0
2,080,904	+		IAI47_09830	0.18	-0.2
2,080,905	-		IAI47_09830	0.18	-0.0
2,081,000	+		IAI47_09830	0.23	+0.7
2,081,000	+		IAI47_09830	0.23	-2.1
2,081,001	-		IAI47_09830	0.23	-0.9
2,081,001	-		IAI47_09830	0.23	+0.5
2,081,001	-		IAI47_09830	0.23	+0.0
2,081,134	+		IAI47_09830	0.30	+1.1
2,081,134	+		IAI47_09830	0.30	+1.1
2,081,135	-		IAI47_09830	0.30	-2.0
2,081,314	+		IAI47_09830	0.38	+2.1
2,081,315	-		IAI47_09830	0.38	-0.1
2,081,367	+		IAI47_09830	0.41	-0.5
2,081,367	+		IAI47_09830	0.41	-2.5
2,081,367	+		IAI47_09830	0.41	+2.1
2,081,367	+		IAI47_09830	0.41	-1.5
2,081,368	-		IAI47_09830	0.41	-1.7
2,081,368	-		IAI47_09830	0.41	-1.6
2,081,368	-		IAI47_09830	0.41	+0.1
2,081,368	-		IAI47_09830	0.41	+1.2
2,081,368	-		IAI47_09830	0.41	-1.1
2,081,368	-		IAI47_09830	0.41	-1.1
2,081,368	-		IAI47_09830	0.41	-1.5
2,081,426	+		IAI47_09830	0.44	+0.1
2,081,427	-		IAI47_09830	0.44	-1.5
2,081,493	-		IAI47_09830	0.47	+0.4
2,081,545	-		IAI47_09830	0.50	+0.5
2,081,571	+		IAI47_09830	0.51	+3.3
2,081,572	-		IAI47_09830	0.51	-0.0
2,081,572	-		IAI47_09830	0.51	-1.6
2,081,572	-		IAI47_09830	0.51	-2.1
2,081,572	-		IAI47_09830	0.51	-1.5
2,081,572	-		IAI47_09830	0.51	-1.6
2,081,572	-		IAI47_09830	0.51	+1.5
2,081,572	-		IAI47_09830	0.51	-2.6
2,081,572	-		IAI47_09830	0.51	-2.1
2,081,594	+		IAI47_09830	0.52	-1.1
2,081,594	+		IAI47_09830	0.52	+0.8
2,081,594	+		IAI47_09830	0.52	-1.4
2,081,594	+		IAI47_09830	0.52	+0.5
2,081,602	-		IAI47_09830	0.52	+1.2
2,081,612	+		IAI47_09830	0.53	-0.9
2,081,613	-		IAI47_09830	0.53	-0.2
2,081,658	+		IAI47_09830	0.55	-0.6
2,081,658	+		IAI47_09830	0.55	+0.5
2,081,658	+		IAI47_09830	0.55	+2.4
2,081,658	+		IAI47_09830	0.55	-1.1
2,081,658	+		IAI47_09830	0.55	-1.1
2,081,659	-		IAI47_09830	0.55	-0.5
2,081,659	-		IAI47_09830	0.55	-0.7
2,081,659	-		IAI47_09830	0.55	+0.5
2,081,659	-		IAI47_09830	0.55	+1.0
2,081,697	+		IAI47_09830	0.57	-0.7
2,081,718	+		IAI47_09830	0.58	-0.7
2,081,718	+		IAI47_09830	0.58	+0.1
2,081,718	+		IAI47_09830	0.58	-1.1
2,081,719	-		IAI47_09830	0.58	+1.2
2,081,719	-		IAI47_09830	0.58	+1.8
2,081,719	-		IAI47_09830	0.58	-0.5
2,081,760	+		IAI47_09830	0.60	-0.9
2,081,760	+		IAI47_09830	0.60	-0.0
2,081,760	+		IAI47_09830	0.60	-1.0
2,081,761	-		IAI47_09830	0.60	-0.2
2,081,761	-		IAI47_09830	0.60	+0.9
2,081,761	-		IAI47_09830	0.60	-0.7
2,081,761	-		IAI47_09830	0.60	-1.5
2,081,761	-		IAI47_09830	0.60	-1.7
2,081,762	+		IAI47_09830	0.60	+0.1
2,081,774	+		IAI47_09830	0.61	+0.5
2,081,856	+		IAI47_09830	0.65	-0.7
2,081,856	+		IAI47_09830	0.65	+0.4
2,081,856	+		IAI47_09830	0.65	-0.6
2,081,856	+		IAI47_09830	0.65	-1.8
2,081,856	+		IAI47_09830	0.65	-0.7
2,081,856	+		IAI47_09830	0.65	+3.1
2,081,856	+		IAI47_09830	0.65	+1.8
2,081,856	+		IAI47_09830	0.65	-0.2
2,081,856	+		IAI47_09830	0.65	+0.4
2,081,856	+		IAI47_09830	0.65	+0.7
2,081,857	-		IAI47_09830	0.65	+0.5
2,081,858	+		IAI47_09830	0.65	-2.4
2,081,858	+		IAI47_09830	0.65	+0.1
2,081,867	+		IAI47_09830	0.65	-0.5
2,081,867	+		IAI47_09830	0.65	+2.5
2,081,867	+		IAI47_09830	0.65	-1.4
2,081,867	+		IAI47_09830	0.65	+0.4
2,081,867	+		IAI47_09830	0.65	+0.1
2,081,868	-		IAI47_09830	0.65	+1.6
2,081,868	-		IAI47_09830	0.65	-0.2
2,081,872	-		IAI47_09830	0.66	-1.4
2,081,924	+		IAI47_09830	0.68	+1.5
2,081,924	+		IAI47_09830	0.68	-0.2
2,081,924	+		IAI47_09830	0.68	+0.3
2,081,924	+		IAI47_09830	0.68	-2.3
2,081,925	-		IAI47_09830	0.68	-1.3
2,081,925	-		IAI47_09830	0.68	-1.1
2,081,925	-		IAI47_09830	0.68	+0.1
2,081,925	-		IAI47_09830	0.68	-1.9
2,081,925	-		IAI47_09830	0.68	+0.0
2,082,078	+		IAI47_09830	0.76	-0.1
2,082,078	+		IAI47_09830	0.76	-0.9
2,082,078	+		IAI47_09830	0.76	+1.4
2,082,079	-		IAI47_09830	0.76	+0.8
2,082,079	-		IAI47_09830	0.76	+1.8
2,082,079	-		IAI47_09830	0.76	-2.3
2,082,162	+		IAI47_09830	0.80	+0.5
2,082,212	+		IAI47_09830	0.82	-1.1
2,082,213	-		IAI47_09830	0.82	+0.6
2,082,213	-		IAI47_09830	0.82	+0.4
2,082,213	-		IAI47_09830	0.82	+1.1
2,082,281	+		IAI47_09830	0.86	+0.3
2,082,281	+		IAI47_09830	0.86	-1.0
2,082,281	+		IAI47_09830	0.86	-0.6
2,082,281	+		IAI47_09830	0.86	+1.2
2,082,281	+		IAI47_09830	0.86	+0.7
2,082,282	-		IAI47_09830	0.86	-0.5
2,082,282	-		IAI47_09830	0.86	+1.3
2,082,282	-		IAI47_09830	0.86	+1.6
2,082,282	-		IAI47_09830	0.86	+1.5
2,082,282	-		IAI47_09830	0.86	-0.1
2,082,321	+		IAI47_09830	0.88	-0.2
2,082,360	+		IAI47_09830	0.89	-0.2
2,082,361	-		IAI47_09830	0.89	+0.3
2,082,361	-		IAI47_09830	0.89	-2.2
2,082,363	+		IAI47_09830	0.90	+0.3
2,082,363	+		IAI47_09830	0.90	+3.0
2,082,363	+		IAI47_09830	0.90	+1.0
2,082,363	+		IAI47_09830	0.90	+0.4
2,082,363	+		IAI47_09830	0.90	+0.0
2,082,363	+		IAI47_09830	0.90	+0.5
2,082,364	-		IAI47_09830	0.90	-0.5
2,082,364	-		IAI47_09830	0.90	-1.8
2,082,364	-		IAI47_09830	0.90	+0.3
2,082,364	-		IAI47_09830	0.90	+1.1
2,082,364	-		IAI47_09830	0.90	+1.7
2,082,364	-		IAI47_09830	0.90	+1.7
2,082,369	+		IAI47_09830	0.90	+1.8
2,082,369	+		IAI47_09830	0.90	-0.7
2,082,369	+		IAI47_09830	0.90	+1.1
2,082,369	+		IAI47_09830	0.90	-1.4
2,082,370	-		IAI47_09830	0.90	-0.0
2,082,370	-		IAI47_09830	0.90	+1.7
2,082,371	+				-0.7
2,082,371	+				-1.2
2,082,371	+				+1.3
2,082,371	+				+1.3
2,082,372	-				-0.5
2,082,372	-				-0.7
2,082,402	+				+1.2
2,082,450	-				+1.2
2,082,494	+				-1.6
2,082,504	+				+0.5
2,082,504	+				-2.3
2,082,505	-				-1.6
2,082,573	+				-0.2
2,082,574	-				-0.2
2,082,609	+				-0.1
2,082,696	+				-1.5
2,082,696	+				+0.8
2,082,697	-				+0.1
2,082,697	-				-0.2
2,082,798	+		IAI47_09835	0.16	+1.4
2,082,803	+		IAI47_09835	0.16	+2.7
2,082,803	+		IAI47_09835	0.16	+0.7
2,082,803	+		IAI47_09835	0.16	+1.5
2,082,803	+		IAI47_09835	0.16	-1.0
2,082,803	+		IAI47_09835	0.16	+0.3
2,082,804	-		IAI47_09835	0.16	-0.5
2,082,804	-		IAI47_09835	0.16	+1.0
2,082,804	-		IAI47_09835	0.16	-0.8
2,082,896	-		IAI47_09835	0.24	+2.8
2,083,007	-		IAI47_09835	0.34	+1.0
2,083,061	+		IAI47_09835	0.38	-1.4
2,083,062	-		IAI47_09835	0.38	+0.8
2,083,128	+		IAI47_09835	0.44	+2.0
2,083,128	+		IAI47_09835	0.44	-2.0
2,083,128	+		IAI47_09835	0.44	+1.4
2,083,129	-		IAI47_09835	0.44	+0.1
2,083,129	-		IAI47_09835	0.44	+0.7
2,083,139	-		IAI47_09835	0.45	-0.2
2,083,186	+		IAI47_09835	0.49	+1.3
2,083,186	+		IAI47_09835	0.49	+0.8
2,083,186	+		IAI47_09835	0.49	+1.2
2,083,186	+		IAI47_09835	0.49	-1.8
2,083,186	+		IAI47_09835	0.49	+1.7
2,083,187	-		IAI47_09835	0.49	-1.2
2,083,187	-		IAI47_09835	0.49	-1.7
2,083,187	-		IAI47_09835	0.49	-0.5
2,083,243	+		IAI47_09835	0.54	+0.5
2,083,248	+		IAI47_09835	0.54	-1.2
2,083,287	+		IAI47_09835	0.58	-0.8
2,083,287	+		IAI47_09835	0.58	+0.9
2,083,287	+		IAI47_09835	0.58	+0.1
2,083,287	+		IAI47_09835	0.58	-0.9
2,083,287	+		IAI47_09835	0.58	-1.2
2,083,288	-		IAI47_09835	0.58	+0.1
2,083,288	-		IAI47_09835	0.58	-1.9
2,083,288	-		IAI47_09835	0.58	-2.2
2,083,288	-		IAI47_09835	0.58	+1.4
2,083,288	-		IAI47_09835	0.58	+0.5
2,083,288	-		IAI47_09835	0.58	-0.2
2,083,288	-		IAI47_09835	0.58	-1.0
2,083,288	-		IAI47_09835	0.58	-2.0
2,083,352	-		IAI47_09835	0.63	-1.8
2,083,438	+		IAI47_09835	0.71	-1.4
2,083,438	+		IAI47_09835	0.71	-0.2
2,083,479	+		IAI47_09835	0.74	-1.1
2,083,486	-		IAI47_09835	0.75	+1.0
2,083,486	-		IAI47_09835	0.75	-1.0
2,083,557	+		IAI47_09835	0.81	+0.1
2,083,557	+		IAI47_09835	0.81	+0.1