Strain Fitness in Pantoea sp. MT58 around IAI47_08725

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,845,638	+				-0.9
1,845,639	-				-0.2
1,845,651	+				+0.6
1,845,662	+				-0.9
1,845,663	-				+1.2
1,845,663	-				+0.9
1,845,712	+				-0.4
1,845,717	+				+0.3
1,845,731	+				+0.2
1,845,732	-				+0.4
1,845,762	+				+0.2
1,845,762	+				+0.2
1,845,762	+				-1.1
1,845,762	+				+1.0
1,845,762	+				+0.6
1,845,763	-				+0.8
1,845,763	-				-2.0
1,845,763	-				-0.1
1,845,763	-				+2.2
1,845,764	+				+1.3
1,845,764	+				+1.8
1,845,764	+				-0.8
1,845,765	-				-2.3
1,845,800	+				+0.5
1,845,801	-				-1.0
1,845,803	+				-1.0
1,845,803	+				-0.8
1,845,804	-				-2.0
1,845,804	-				-0.6
1,845,834	+				-1.8
1,845,864	+				+0.8
1,845,865	-				+0.6
1,845,865	-				-1.2
1,845,912	+		IAI47_08720	0.12	+0.8
1,845,912	+		IAI47_08720	0.12	-0.2
1,845,912	+		IAI47_08720	0.12	+0.2
1,845,912	+		IAI47_08720	0.12	-0.2
1,845,912	+		IAI47_08720	0.12	+0.8
1,845,912	+		IAI47_08720	0.12	-1.0
1,845,912	+		IAI47_08720	0.12	-2.2
1,845,913	-		IAI47_08720	0.12	-0.2
1,845,913	-		IAI47_08720	0.12	+1.9
1,845,913	-		IAI47_08720	0.12	-1.0
1,845,916	-		IAI47_08720	0.13	+2.2
1,845,916	-		IAI47_08720	0.13	-0.0
1,845,958	+		IAI47_08720	0.18	-1.5
1,845,991	+		IAI47_08720	0.22	+0.8
1,846,021	+		IAI47_08720	0.26	-1.5
1,846,021	+		IAI47_08720	0.26	-0.0
1,846,021	+		IAI47_08720	0.26	+1.2
1,846,064	+		IAI47_08720	0.32	-1.3
1,846,065	-		IAI47_08720	0.32	-0.8
1,846,164	+		IAI47_08720	0.44	+0.8
1,846,164	+		IAI47_08720	0.44	-1.4
1,846,164	+		IAI47_08720	0.44	+0.5
1,846,164	+		IAI47_08720	0.44	+0.2
1,846,165	-		IAI47_08720	0.44	-0.8
1,846,165	-		IAI47_08720	0.44	+1.8
1,846,165	-		IAI47_08720	0.44	-1.2
1,846,171	+		IAI47_08720	0.45	+2.4
1,846,172	-		IAI47_08720	0.45	+0.8
1,846,172	-		IAI47_08720	0.45	-0.2
1,846,195	+		IAI47_08720	0.48	-0.4
1,846,195	+		IAI47_08720	0.48	-0.4
1,846,195	+		IAI47_08720	0.48	-1.3
1,846,195	+		IAI47_08720	0.48	+1.5
1,846,196	-		IAI47_08720	0.48	+0.6
1,846,196	-		IAI47_08720	0.48	-1.7
1,846,206	+		IAI47_08720	0.49	-0.4
1,846,206	+		IAI47_08720	0.49	+1.0
1,846,206	+		IAI47_08720	0.49	-1.7
1,846,206	+		IAI47_08720	0.49	-2.1
1,846,206	+		IAI47_08720	0.49	-0.1
1,846,206	+		IAI47_08720	0.49	-0.6
1,846,206	+		IAI47_08720	0.49	-0.8
1,846,206	+		IAI47_08720	0.49	-0.2
1,846,206	+		IAI47_08720	0.49	+2.6
1,846,206	+		IAI47_08720	0.49	+0.8
1,846,207	-		IAI47_08720	0.50	-0.4
1,846,207	-		IAI47_08720	0.50	-0.2
1,846,207	-		IAI47_08720	0.50	+0.2
1,846,207	-		IAI47_08720	0.50	-0.4
1,846,210	+		IAI47_08720	0.50	+1.3
1,846,210	+		IAI47_08720	0.50	-0.2
1,846,210	+		IAI47_08720	0.50	-0.4
1,846,210	+		IAI47_08720	0.50	+0.6
1,846,210	+		IAI47_08720	0.50	-0.7
1,846,210	+		IAI47_08720	0.50	+2.5
1,846,211	-		IAI47_08720	0.50	+1.2
1,846,211	-		IAI47_08720	0.50	-1.4
1,846,211	-		IAI47_08720	0.50	+0.2
1,846,211	-		IAI47_08720	0.50	-1.0
1,846,211	-		IAI47_08720	0.50	-0.6
1,846,230	+		IAI47_08720	0.53	-2.5
1,846,242	+		IAI47_08720	0.54	+1.9
1,846,243	-		IAI47_08720	0.54	-1.3
1,846,243	-		IAI47_08720	0.54	-2.7
1,846,243	-		IAI47_08720	0.54	+3.8
1,846,243	-		IAI47_08720	0.54	+1.0
1,846,257	+		IAI47_08720	0.56	+2.0
1,846,326	+		IAI47_08720	0.65	+2.4
1,846,326	+		IAI47_08720	0.65	+1.3
1,846,326	+		IAI47_08720	0.65	-0.1
1,846,326	+		IAI47_08720	0.65	-0.0
1,846,327	-		IAI47_08720	0.65	+3.8
1,846,338	+		IAI47_08720	0.66	-1.8
1,846,338	+		IAI47_08720	0.66	-2.9
1,846,346	+		IAI47_08720	0.67	-1.2
1,846,396	+		IAI47_08720	0.73	+1.8
1,846,397	-		IAI47_08720	0.74	+0.6
1,846,407	+		IAI47_08720	0.75	-1.1
1,846,488	+		IAI47_08720	0.85	+0.0
1,846,488	+		IAI47_08720	0.85	+2.2
1,846,488	+		IAI47_08720	0.85	-2.3
1,846,488	+		IAI47_08720	0.85	-0.6
1,846,488	+		IAI47_08720	0.85	-1.2
1,846,488	+		IAI47_08720	0.85	-1.4
1,846,489	-		IAI47_08720	0.85	-1.4
1,846,489	-		IAI47_08720	0.85	-1.0
1,846,489	-		IAI47_08720	0.85	-1.8
1,846,489	-		IAI47_08720	0.85	-0.4
1,846,534	+				+0.8
1,846,534	+				-1.8
1,846,631	+				-1.6
1,846,631	+				+1.8
1,846,631	+				+0.9
1,846,631	+				-1.0
1,846,631	+				-0.8
1,846,632	-				-0.7
1,846,632	-				-1.6
1,846,632	-				-0.2
1,846,634	+				-0.3
1,846,634	+				-0.2
1,846,634	+				-0.2
1,846,637	+				+0.6
1,846,637	+				-0.9
1,846,637	+				+2.6
1,846,637	+				-2.1
1,846,637	+				-1.2
1,846,637	+				-1.0
1,846,637	+				+0.2
1,846,637	+				+0.0
1,846,637	+				+1.0
1,846,637	+				-1.9
1,846,637	+				+0.2
1,846,637	+				-1.6
1,846,638	-				+2.2
1,846,638	-				+1.4
1,846,638	-				+0.8
1,846,638	-				+1.6
1,846,638	-				-1.3
1,846,638	-				-1.3
1,846,638	-				+0.3
1,846,638	-				+2.5
1,846,638	-				-1.7
1,846,642	-				-0.6
1,846,644	-				-1.4
1,846,693	+		IAI47_08725	0.24	-0.6
1,846,693	+		IAI47_08725	0.24	-1.2
1,846,693	+		IAI47_08725	0.24	+0.7
1,846,693	+		IAI47_08725	0.24	-0.2
1,846,694	-		IAI47_08725	0.24	-1.0
1,846,715	+		IAI47_08725	0.33	+1.2
1,846,715	+		IAI47_08725	0.33	+1.2
1,846,715	+		IAI47_08725	0.33	-0.7
1,846,716	-		IAI47_08725	0.34	-0.4
1,846,716	-		IAI47_08725	0.34	+0.8
1,846,716	-		IAI47_08725	0.34	-2.3
1,846,748	+		IAI47_08725	0.47	+0.6
1,846,748	+		IAI47_08725	0.47	+1.3
1,846,748	+		IAI47_08725	0.47	-1.9
1,846,783	-		IAI47_08725	0.62	+0.0
1,846,798	+		IAI47_08725	0.68	+2.3
1,846,798	+		IAI47_08725	0.68	-0.2
1,846,799	-		IAI47_08725	0.69	+2.2
1,846,799	-		IAI47_08725	0.69	+1.7
1,846,849	+				+1.0
1,846,850	-				-0.8
1,846,850	-				-0.8
1,846,873	+				+2.0
1,846,873	+				+0.3
1,846,873	+				+0.6
1,846,873	+				+0.6
1,846,874	-				+1.0
1,846,874	-				-0.8
1,846,874	-				+0.6
1,846,874	-				+1.6
1,846,874	-				+0.2
1,846,892	+				+1.8
1,846,892	+				+0.3
1,846,892	+				+1.2
1,846,923	-				-1.3
1,846,930	+				-0.4
1,846,931	-				-1.1
1,846,970	+				-1.4
1,846,970	+				-1.6
1,847,010	-				-0.6
1,847,026	-				+0.8
1,847,032	-				+0.1
1,847,063	+				+0.9
1,847,074	+				-1.7
1,847,086	-				+0.6
1,847,114	+		IAI47_08730	0.14	-0.3
1,847,114	+		IAI47_08730	0.14	-1.2
1,847,114	+		IAI47_08730	0.14	-1.1
1,847,130	+		IAI47_08730	0.20	+1.3
1,847,131	+		IAI47_08730	0.21	-1.1
1,847,131	+		IAI47_08730	0.21	-1.9
1,847,136	+		IAI47_08730	0.22	-0.8
1,847,136	+		IAI47_08730	0.22	+3.2
1,847,137	-		IAI47_08730	0.23	+1.1
1,847,205	+		IAI47_08730	0.48	-2.0
1,847,206	-		IAI47_08730	0.48	+0.2
1,847,346	-				-0.4
1,847,387	+				+0.6
1,847,388	-				-0.5
1,847,388	-				+1.6
1,847,388	-				-2.3
1,847,410	+				+0.2
1,847,411	-				-1.9
1,847,411	-				+1.0
1,847,411	-				+1.8
1,847,411	-				-0.3
1,847,411	-				+0.6
1,847,428	+				-0.3
1,847,428	+				+1.4
1,847,428	+				+0.2
1,847,429	-				+0.0
1,847,429	-				+0.6
1,847,486	-		IAI47_08735	0.12	+0.2
1,847,486	-		IAI47_08735	0.12	+0.5
1,847,523	-		IAI47_08735	0.16	+1.2
1,847,630	+		IAI47_08735	0.26	+0.2
1,847,630	+		IAI47_08735	0.26	+0.6
1,847,630	+		IAI47_08735	0.26	+1.3
1,847,630	+		IAI47_08735	0.26	+0.6
1,847,630	+		IAI47_08735	0.26	+1.3
1,847,630	+		IAI47_08735	0.26	-0.7
1,847,630	+		IAI47_08735	0.26	+1.6
1,847,630	+		IAI47_08735	0.26	-1.0
1,847,630	+		IAI47_08735	0.26	-0.2
1,847,631	-		IAI47_08735	0.26	-2.2
1,847,631	-		IAI47_08735	0.26	+0.6
1,847,631	-		IAI47_08735	0.26	+2.4
1,847,631	-		IAI47_08735	0.26	+0.4
1,847,631	-		IAI47_08735	0.26	+0.9
1,847,631	-		IAI47_08735	0.26	-1.2
1,847,631	-		IAI47_08735	0.26	+2.2
1,847,631	-		IAI47_08735	0.26	+1.4
1,847,631	-		IAI47_08735	0.26	+0.8
1,847,631	-		IAI47_08735	0.26	-1.6
1,847,631	-		IAI47_08735	0.26	-0.2
1,847,631	-		IAI47_08735	0.26	-1.8
1,847,632	+		IAI47_08735	0.26	+0.5
1,847,632	+		IAI47_08735	0.26	-0.6
1,847,632	+		IAI47_08735	0.26	-0.4
1,847,632	+		IAI47_08735	0.26	+0.2
1,847,632	+		IAI47_08735	0.26	-1.3
1,847,632	+		IAI47_08735	0.26	-1.3
1,847,633	-		IAI47_08735	0.26	+0.8
1,847,633	-		IAI47_08735	0.26	-0.9
1,847,717	-		IAI47_08735	0.35	+2.8
1,847,717	-		IAI47_08735	0.35	-0.5
1,847,758	+		IAI47_08735	0.39	+0.6
1,847,759	-		IAI47_08735	0.39	+1.3
1,847,759	-		IAI47_08735	0.39	-0.8
1,847,766	-		IAI47_08735	0.40	-0.2
1,847,766	-		IAI47_08735	0.40	+0.4
1,847,797	+		IAI47_08735	0.43	-0.3
1,847,797	+		IAI47_08735	0.43	-0.4
1,847,797	+		IAI47_08735	0.43	-1.5
1,847,797	+		IAI47_08735	0.43	-1.2
1,847,798	-		IAI47_08735	0.43	+0.3
1,847,798	-		IAI47_08735	0.43	-1.4
1,847,798	-		IAI47_08735	0.43	-1.2
1,847,798	-		IAI47_08735	0.43	+1.3
1,847,798	-		IAI47_08735	0.43	-1.0
1,847,827	+		IAI47_08735	0.46	-2.2
1,847,827	+		IAI47_08735	0.46	-1.3
1,847,827	+		IAI47_08735	0.46	+2.2
1,847,828	-		IAI47_08735	0.46	+3.4
1,847,848	+		IAI47_08735	0.48	+0.4
1,847,849	-		IAI47_08735	0.48	+1.1
1,847,849	-		IAI47_08735	0.48	+0.7