Strain Fitness in Pantoea sp. MT58 around IAI47_06835

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,426,179	+				+1.3
1,426,179	+				-0.9
1,426,179	+				-0.4
1,426,179	+				-1.1
1,426,180	-				+2.9
1,426,267	+		IAI47_06830	0.17	+1.6
1,426,268	-		IAI47_06830	0.18	-1.0
1,426,268	-		IAI47_06830	0.18	+0.1
1,426,306	+		IAI47_06830	0.21	-1.6
1,426,306	+		IAI47_06830	0.21	-1.6
1,426,307	-		IAI47_06830	0.21	-0.0
1,426,307	-		IAI47_06830	0.21	-1.4
1,426,307	-		IAI47_06830	0.21	-0.3
1,426,346	-		IAI47_06830	0.25	+0.7
1,426,465	+		IAI47_06830	0.37	-1.5
1,426,465	+		IAI47_06830	0.37	+0.9
1,426,549	+		IAI47_06830	0.45	-1.0
1,426,549	+		IAI47_06830	0.45	+0.2
1,426,550	-		IAI47_06830	0.45	+0.1
1,426,550	-		IAI47_06830	0.45	-0.3
1,426,551	+		IAI47_06830	0.45	-0.6
1,426,551	+		IAI47_06830	0.45	+0.9
1,426,552	-		IAI47_06830	0.46	-0.9
1,426,566	-		IAI47_06830	0.47	-2.8
1,426,602	+		IAI47_06830	0.51	-1.9
1,426,603	-		IAI47_06830	0.51	+1.3
1,426,603	-		IAI47_06830	0.51	-0.4
1,426,663	+		IAI47_06830	0.57	+0.5
1,426,664	-		IAI47_06830	0.57	+0.7
1,426,664	-		IAI47_06830	0.57	-2.0
1,426,825	-		IAI47_06830	0.73	-0.4
1,426,894	+		IAI47_06830	0.79	+0.6
1,426,894	+		IAI47_06830	0.79	-0.0
1,426,894	+		IAI47_06830	0.79	-2.2
1,426,895	-		IAI47_06830	0.80	-1.0
1,426,898	+		IAI47_06830	0.80	+0.5
1,426,899	-		IAI47_06830	0.80	+1.3
1,426,899	-		IAI47_06830	0.80	-1.3
1,426,945	-		IAI47_06830	0.84	-1.9
1,426,975	+		IAI47_06830	0.87	+0.4
1,426,975	+		IAI47_06830	0.87	-2.3
1,426,975	+		IAI47_06830	0.87	-0.9
1,426,975	+		IAI47_06830	0.87	+0.2
1,426,975	+		IAI47_06830	0.87	-0.5
1,426,975	+		IAI47_06830	0.87	-0.7
1,426,975	+		IAI47_06830	0.87	+1.7
1,426,975	+		IAI47_06830	0.87	+2.0
1,426,975	+		IAI47_06830	0.87	+0.4
1,426,976	-		IAI47_06830	0.88	+2.0
1,426,976	-		IAI47_06830	0.88	+0.3
1,426,976	-		IAI47_06830	0.88	+1.7
1,426,976	-		IAI47_06830	0.88	+0.3
1,426,976	-		IAI47_06830	0.88	-1.9
1,426,976	-		IAI47_06830	0.88	+1.1
1,426,976	-		IAI47_06830	0.88	+1.5
1,427,004	+				+0.7
1,427,005	-				+0.5
1,427,060	+				-1.9
1,427,061	-				+1.1
1,427,061	-				-0.3
1,427,086	+				+3.5
1,427,114	-				+0.5
1,427,158	+				-0.1
1,427,158	+				-0.5
1,427,158	+				+2.8
1,427,158	+				+0.1
1,427,159	-				-1.0
1,427,159	-				-1.9
1,427,159	-				+1.1
1,427,171	-				-0.2
1,427,176	+				-1.5
1,427,176	+				+1.8
1,427,176	+				-1.7
1,427,177	-				-2.4
1,427,205	+				-2.0
1,427,205	+				-0.3
1,427,206	-				+1.5
1,427,206	-				+0.3
1,427,237	+		IAI47_06835	0.10	-1.5
1,427,237	+		IAI47_06835	0.10	-0.8
1,427,237	+		IAI47_06835	0.10	+0.5
1,427,237	+		IAI47_06835	0.10	+0.7
1,427,237	+		IAI47_06835	0.10	-0.3
1,427,237	+		IAI47_06835	0.10	+0.3
1,427,237	+		IAI47_06835	0.10	-0.1
1,427,237	+		IAI47_06835	0.10	-1.1
1,427,238	-		IAI47_06835	0.10	+2.3
1,427,238	-		IAI47_06835	0.10	+0.8
1,427,238	-		IAI47_06835	0.10	-0.6
1,427,238	-		IAI47_06835	0.10	-1.6
1,427,238	-		IAI47_06835	0.10	-1.9
1,427,238	-		IAI47_06835	0.10	-0.9
1,427,238	-		IAI47_06835	0.10	+0.1
1,427,238	-		IAI47_06835	0.10	+0.7
1,427,238	-		IAI47_06835	0.10	-0.5
1,427,238	-		IAI47_06835	0.10	-0.6
1,427,238	-		IAI47_06835	0.10	+2.3
1,427,239	+		IAI47_06835	0.10	-0.3
1,427,239	+		IAI47_06835	0.10	-0.1
1,427,239	+		IAI47_06835	0.10	-0.1
1,427,239	+		IAI47_06835	0.10	-0.1
1,427,239	+		IAI47_06835	0.10	+0.7
1,427,240	-		IAI47_06835	0.11	+1.5
1,427,240	-		IAI47_06835	0.11	-1.4
1,427,240	-		IAI47_06835	0.11	-0.3
1,427,240	-		IAI47_06835	0.11	+0.4
1,427,240	-		IAI47_06835	0.11	+3.9
1,427,240	-		IAI47_06835	0.11	+0.2
1,427,240	-		IAI47_06835	0.11	+0.9
1,427,240	-		IAI47_06835	0.11	+0.7
1,427,271	+		IAI47_06835	0.13	+0.9
1,427,271	+		IAI47_06835	0.13	+1.0
1,427,271	+		IAI47_06835	0.13	-1.3
1,427,272	-		IAI47_06835	0.13	+0.4
1,427,272	-		IAI47_06835	0.13	+1.9
1,427,272	-		IAI47_06835	0.13	+0.6
1,427,272	-		IAI47_06835	0.13	+0.9
1,427,272	-		IAI47_06835	0.13	-0.1
1,427,272	-		IAI47_06835	0.13	-0.8
1,427,272	-		IAI47_06835	0.13	+0.7
1,427,302	+		IAI47_06835	0.16	-0.7
1,427,302	+		IAI47_06835	0.16	+1.3
1,427,302	+		IAI47_06835	0.16	-2.3
1,427,302	+		IAI47_06835	0.16	-1.1
1,427,302	+		IAI47_06835	0.16	-0.2
1,427,303	-		IAI47_06835	0.16	-1.1
1,427,303	-		IAI47_06835	0.16	+2.1
1,427,303	-		IAI47_06835	0.16	-0.9
1,427,408	-		IAI47_06835	0.24	-1.3
1,427,408	-		IAI47_06835	0.24	-1.0
1,427,429	+		IAI47_06835	0.26	-0.3
1,427,429	+		IAI47_06835	0.26	-1.6
1,427,429	+		IAI47_06835	0.26	+0.3
1,427,429	+		IAI47_06835	0.26	-3.0
1,427,430	-		IAI47_06835	0.26	-1.5
1,427,438	+		IAI47_06835	0.27	-0.9
1,427,479	+		IAI47_06835	0.30	+1.5
1,427,480	-		IAI47_06835	0.30	+0.7
1,427,480	-		IAI47_06835	0.30	-0.3
1,427,510	+		IAI47_06835	0.33	+1.6
1,427,510	+		IAI47_06835	0.33	+0.2
1,427,511	-		IAI47_06835	0.33	+1.5
1,427,511	-		IAI47_06835	0.33	+0.9
1,427,511	-		IAI47_06835	0.33	-1.3
1,427,511	-		IAI47_06835	0.33	-1.5
1,427,511	-		IAI47_06835	0.33	-2.0
1,427,511	-		IAI47_06835	0.33	+0.3
1,427,511	-		IAI47_06835	0.33	+2.0
1,427,511	-		IAI47_06835	0.33	-0.6
1,427,511	-		IAI47_06835	0.33	-1.3
1,427,649	-		IAI47_06835	0.44	-0.1
1,427,764	+		IAI47_06835	0.54	-0.7
1,427,764	+		IAI47_06835	0.54	-0.0
1,427,821	+		IAI47_06835	0.58	+0.4
1,427,822	-		IAI47_06835	0.58	+0.3
1,427,822	-		IAI47_06835	0.58	+0.1
1,427,852	-		IAI47_06835	0.61	-0.0
1,427,852	-		IAI47_06835	0.61	+0.3
1,427,852	-		IAI47_06835	0.61	+1.9
1,427,852	-		IAI47_06835	0.61	-1.0
1,427,852	-		IAI47_06835	0.61	-1.6
1,427,923	+		IAI47_06835	0.67	-1.1
1,427,923	+		IAI47_06835	0.67	-1.7
1,427,924	-		IAI47_06835	0.67	-0.0
1,427,924	-		IAI47_06835	0.67	-1.9
1,427,968	+		IAI47_06835	0.70	+2.9
1,427,968	+		IAI47_06835	0.70	-0.6
1,427,968	+		IAI47_06835	0.70	-0.7
1,427,968	+		IAI47_06835	0.70	+0.7
1,427,969	-		IAI47_06835	0.71	-0.1
1,427,969	-		IAI47_06835	0.71	-1.1
1,427,969	-		IAI47_06835	0.71	+0.9
1,427,969	-		IAI47_06835	0.71	+2.0
1,427,969	-		IAI47_06835	0.71	-1.5
1,428,010	+		IAI47_06835	0.74	+1.2
1,428,020	+		IAI47_06835	0.75	+0.6
1,428,021	-		IAI47_06835	0.75	-1.0
1,428,021	-		IAI47_06835	0.75	-1.0
1,428,021	-		IAI47_06835	0.75	-1.3
1,428,032	+		IAI47_06835	0.76	-0.1
1,428,033	-		IAI47_06835	0.76	+2.0
1,428,033	-		IAI47_06835	0.76	+0.6
1,428,041	+		IAI47_06835	0.76	+1.3
1,428,057	-		IAI47_06835	0.78	-0.5
1,428,071	+		IAI47_06835	0.79	+3.1
1,428,103	+		IAI47_06835	0.82	+0.7
1,428,115	+		IAI47_06835	0.83	-0.0
1,428,121	+		IAI47_06835	0.83	+0.2
1,428,122	-		IAI47_06835	0.83	+0.3
1,428,122	-		IAI47_06835	0.83	-1.3
1,428,122	-		IAI47_06835	0.83	+1.3
1,428,122	-		IAI47_06835	0.83	+1.0
1,428,131	+		IAI47_06835	0.84	+0.3
1,428,131	+		IAI47_06835	0.84	-1.1
1,428,131	+		IAI47_06835	0.84	-0.0
1,428,131	+		IAI47_06835	0.84	-2.0
1,428,132	-		IAI47_06835	0.84	+0.6
1,428,132	-		IAI47_06835	0.84	+0.7
1,428,205	-				-1.5
1,428,297	+				-2.2
1,428,297	+				-0.7
1,428,298	-				-0.3
1,428,298	-				+1.3
1,428,303	+				+2.4
1,428,303	+				+0.8
1,428,304	-				+0.7
1,428,315	-				+1.3
1,428,450	+				+0.6
1,428,451	-				-0.9
1,428,451	-				-1.3
1,428,451	-				-0.7
1,428,451	-				-0.7
1,428,476	+				+1.3
1,428,477	-				-1.2
1,428,501	+				-0.8
1,428,501	+				+1.3
1,428,501	+				-0.9
1,428,501	+				+1.3
1,428,501	+				-0.0
1,428,502	-				-1.7
1,428,502	-				-0.2
1,428,571	+				-0.7
1,428,571	+				-0.1
1,428,571	+				-0.2
1,428,633	+		IAI47_06840	0.11	+0.4
1,428,634	-		IAI47_06840	0.11	+0.2
1,428,783	+		IAI47_06840	0.28	+2.0
1,428,783	+		IAI47_06840	0.28	-0.0
1,428,783	+		IAI47_06840	0.28	-1.3
1,428,784	-		IAI47_06840	0.28	+1.9
1,428,834	+		IAI47_06840	0.34	-0.0
1,428,834	+		IAI47_06840	0.34	+0.2
1,428,834	+		IAI47_06840	0.34	+3.3
1,428,834	+		IAI47_06840	0.34	+2.0
1,428,834	+		IAI47_06840	0.34	-0.3
1,428,834	+		IAI47_06840	0.34	-0.9
1,428,835	-		IAI47_06840	0.34	-1.9
1,428,835	-		IAI47_06840	0.34	-0.8
1,428,840	+		IAI47_06840	0.34	-0.2
1,428,840	+		IAI47_06840	0.34	+0.3
1,428,841	-		IAI47_06840	0.34	-2.5
1,428,841	-		IAI47_06840	0.34	-1.3
1,428,841	-		IAI47_06840	0.34	+1.7
1,428,841	-		IAI47_06840	0.34	-2.1
1,428,898	-		IAI47_06840	0.41	-1.4
1,428,912	+		IAI47_06840	0.42	-0.6
1,428,941	+		IAI47_06840	0.45	+1.1
1,428,942	-		IAI47_06840	0.46	-2.3
1,429,023	+		IAI47_06840	0.55	-0.9
1,429,023	+		IAI47_06840	0.55	-0.6
1,429,024	-		IAI47_06840	0.55	-2.5
1,429,031	+		IAI47_06840	0.55	-0.1
1,429,031	+		IAI47_06840	0.55	-1.2
1,429,032	-		IAI47_06840	0.56	+2.3
1,429,093	+		IAI47_06840	0.62	-1.7
1,429,094	-		IAI47_06840	0.62	+3.3
1,429,094	-		IAI47_06840	0.62	-0.3
1,429,246	+		IAI47_06840	0.79	-0.4
1,429,246	+		IAI47_06840	0.79	+0.6
1,429,246	+		IAI47_06840	0.79	-0.7
1,429,286	+		IAI47_06840	0.84	+0.3
1,429,286	+		IAI47_06840	0.84	-0.7
1,429,287	-		IAI47_06840	0.84	-0.1
1,429,287	-		IAI47_06840	0.84	-1.6
1,429,287	-		IAI47_06840	0.84	-1.5
1,429,287	-		IAI47_06840	0.84	-1.8
1,429,287	-		IAI47_06840	0.84	-0.3
1,429,287	-		IAI47_06840	0.84	-0.9