Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14315

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14305 and HSERO_RS14310 are separated by 79 nucleotidesHSERO_RS14310 and HSERO_RS14315 are separated by 9 nucleotidesHSERO_RS14315 and HSERO_RS14320 overlap by 4 nucleotidesHSERO_RS14320 and HSERO_RS14325 are separated by 4 nucleotides HSERO_RS14305: HSERO_RS14305 - chemotaxis protein CheY, at 3,247,715 to 3,248,146 _RS14305 HSERO_RS14310: HSERO_RS14310 - globin, at 3,248,226 to 3,248,603 _RS14310 HSERO_RS14315: HSERO_RS14315 - hypothetical protein, at 3,248,613 to 3,249,200 _RS14315 HSERO_RS14320: HSERO_RS14320 - FmdB family transcriptional regulator, at 3,249,197 to 3,249,520 _RS14320 HSERO_RS14325: HSERO_RS14325 - hypothetical protein, at 3,249,525 to 3,250,376 _RS14325 Position (kb) 3248 3249 3250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3247.659 kb on + strandat 3247.868 kb on + strand, within HSERO_RS14305at 3247.906 kb on + strand, within HSERO_RS14305at 3248.111 kb on + strandat 3248.183 kb on + strandat 3248.188 kb on + strandat 3248.193 kb on + strandat 3248.632 kb on - strandat 3248.893 kb on - strand, within HSERO_RS14315at 3248.910 kb on + strand, within HSERO_RS14315at 3248.988 kb on - strand, within HSERO_RS14315at 3249.240 kb on + strand, within HSERO_RS14320at 3249.309 kb on - strand, within HSERO_RS14320at 3249.906 kb on + strand, within HSERO_RS14325at 3249.968 kb on + strand, within HSERO_RS14325at 3249.983 kb on - strand, within HSERO_RS14325

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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3,247,659 + -1.2
3,247,868 + HSERO_RS14305 0.35 +0.7
3,247,906 + HSERO_RS14305 0.44 -2.5
3,248,111 + -2.8
3,248,183 + +1.9
3,248,188 + -0.8
3,248,193 + +0.4
3,248,632 - -0.0
3,248,893 - HSERO_RS14315 0.48 -0.4
3,248,910 + HSERO_RS14315 0.51 -0.7
3,248,988 - HSERO_RS14315 0.64 -0.8
3,249,240 + HSERO_RS14320 0.13 +0.4
3,249,309 - HSERO_RS14320 0.35 -1.5
3,249,906 + HSERO_RS14325 0.45 -0.8
3,249,968 + HSERO_RS14325 0.52 -0.6
3,249,983 - HSERO_RS14325 0.54 +0.4

Or see this region's nucleotide sequence