Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4196

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_4194 and Ga0059261_4195 overlap by 4 nucleotidesGa0059261_4195 and Ga0059261_4196 overlap by 4 nucleotidesGa0059261_4196 and Ga0059261_4197 overlap by 1 nucleotides Ga0059261_4194: Ga0059261_4194 - Type II secretory pathway, component ExeA (predicted ATPase), at 4,345,439 to 4,346,545 _4194 Ga0059261_4195: Ga0059261_4195 - polysaccharide deacetylase family protein, PEP-CTERM locus subfamily, at 4,346,542 to 4,347,384 _4195 Ga0059261_4196: Ga0059261_4196 - FemAB-related protein, PEP-CTERM system-associated, at 4,347,381 to 4,348,454 _4196 Ga0059261_4197: Ga0059261_4197 - sugar transferase, PEP-CTERM/EpsH1 system associated, at 4,348,454 to 4,349,677 _4197 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4346.507 kb on - strandat 4346.606 kb on + strandat 4346.607 kb on - strandat 4346.607 kb on - strandat 4346.734 kb on + strand, within Ga0059261_4195at 4346.734 kb on + strand, within Ga0059261_4195at 4346.735 kb on - strand, within Ga0059261_4195at 4346.735 kb on - strand, within Ga0059261_4195at 4346.754 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.966 kb on - strand, within Ga0059261_4195at 4346.966 kb on - strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4347.007 kb on + strand, within Ga0059261_4195at 4347.008 kb on - strand, within Ga0059261_4195at 4347.008 kb on - strand, within Ga0059261_4195at 4347.068 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.202 kb on + strand, within Ga0059261_4195at 4347.202 kb on + strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.807 kb on + strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.915 kb on - strand, within Ga0059261_4196at 4347.915 kb on - strand, within Ga0059261_4196at 4347.954 kb on + strandat 4347.954 kb on + strandat 4347.954 kb on + strand, within Ga0059261_4196at 4347.955 kb on - strandat 4347.963 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.128 kb on + strand, within Ga0059261_4196at 4348.129 kb on - strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.308 kb on + strand, within Ga0059261_4196at 4348.308 kb on + strand, within Ga0059261_4196at 4348.311 kb on + strand, within Ga0059261_4196at 4348.311 kb on + strandat 4348.311 kb on + strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.368 kb on + strandat 4348.538 kb on + strandat 4348.538 kb on + strandat 4348.539 kb on - strandat 4348.539 kb on - strandat 4348.552 kb on + strandat 4348.552 kb on + strandat 4348.552 kb on + strandat 4348.553 kb on - strandat 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strandat 4348.812 kb on - strand, within Ga0059261_4197at 4348.812 kb on - strand, within Ga0059261_4197at 4348.812 kb on - strandat 4348.883 kb on + strand, within Ga0059261_4197at 4348.883 kb on + strand, within Ga0059261_4197at 4348.884 kb on - strand, within Ga0059261_4197at 4348.884 kb on - strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.048 kb on - strand, within Ga0059261_4197at 4349.049 kb on - strand, within Ga0059261_4197at 4349.069 kb on - strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.162 kb on - strand, within Ga0059261_4197

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
4,346,507 - -1.6
4,346,606 + +1.0
4,346,607 - +0.9
4,346,607 - +3.0
4,346,734 + Ga0059261_4195 0.23 +1.1
4,346,734 + Ga0059261_4195 0.23 +0.9
4,346,735 - Ga0059261_4195 0.23 +2.0
4,346,735 - Ga0059261_4195 0.23 -1.4
4,346,754 + Ga0059261_4195 0.25 -0.2
4,346,965 + Ga0059261_4195 0.50 -0.4
4,346,965 + Ga0059261_4195 0.50 -1.8
4,346,965 + Ga0059261_4195 0.50 -2.2
4,346,965 + Ga0059261_4195 0.50 -1.1
4,346,965 + Ga0059261_4195 0.50 -0.1
4,346,965 + Ga0059261_4195 0.50 -0.6
4,346,966 - Ga0059261_4195 0.50 -1.5
4,346,966 - Ga0059261_4195 0.50 -1.6
4,346,971 + Ga0059261_4195 0.51 -0.8
4,346,971 + Ga0059261_4195 0.51 -2.6
4,346,971 + Ga0059261_4195 0.51 -2.6
4,346,971 + Ga0059261_4195 0.51 +0.1
4,346,971 + Ga0059261_4195 0.51 +1.4
4,346,972 - Ga0059261_4195 0.51 -0.6
4,346,972 - Ga0059261_4195 0.51 -0.9
4,346,972 - Ga0059261_4195 0.51 -1.9
4,346,972 - Ga0059261_4195 0.51 -0.2
4,347,007 + Ga0059261_4195 0.55 +0.5
4,347,008 - Ga0059261_4195 0.55 +0.8
4,347,008 - Ga0059261_4195 0.55 -0.2
4,347,068 - Ga0059261_4195 0.62 -2.1
4,347,155 - Ga0059261_4195 0.73 -0.8
4,347,155 - Ga0059261_4195 0.73 -0.3
4,347,155 - Ga0059261_4195 0.73 -3.9
4,347,202 + Ga0059261_4195 0.78 -1.5
4,347,202 + Ga0059261_4195 0.78 -1.3
4,347,203 - Ga0059261_4195 0.78 +2.0
4,347,203 - Ga0059261_4195 0.78 -0.5
4,347,203 - Ga0059261_4195 0.78 +1.6
4,347,277 + Ga0059261_4195 0.87 -1.1
4,347,277 + Ga0059261_4195 0.87 +0.8
4,347,277 + Ga0059261_4195 0.87 -0.1
4,347,552 + Ga0059261_4196 0.16 +0.1
4,347,552 + Ga0059261_4196 0.16 -1.9
4,347,552 + Ga0059261_4196 0.16 -3.0
4,347,552 + Ga0059261_4196 0.16 +2.9
4,347,552 + Ga0059261_4196 0.16 -0.2
4,347,552 + Ga0059261_4196 0.16 -0.2
4,347,552 + Ga0059261_4196 0.16 -0.4
4,347,553 - Ga0059261_4196 0.16 -0.9
4,347,553 - Ga0059261_4196 0.16 +0.1
4,347,553 - Ga0059261_4196 0.16 +0.4
4,347,807 + Ga0059261_4196 0.40 -2.4
4,347,808 - Ga0059261_4196 0.40 +1.0
4,347,808 - Ga0059261_4196 0.40 +0.9
4,347,808 - Ga0059261_4196 0.40 +0.4
4,347,915 - Ga0059261_4196 0.50 +2.4
4,347,915 - Ga0059261_4196 0.50 -1.7
4,347,954 + +4.7
4,347,954 + +0.8
4,347,954 + Ga0059261_4196 0.53 +0.6
4,347,955 - +0.8
4,347,963 + Ga0059261_4196 0.54 -0.4
4,348,122 + Ga0059261_4196 0.69 -0.6
4,348,122 + Ga0059261_4196 0.69 +0.1
4,348,122 + Ga0059261_4196 0.69 -2.6
4,348,122 + Ga0059261_4196 0.69 -1.4
4,348,122 + Ga0059261_4196 0.69 -0.2
4,348,122 + Ga0059261_4196 0.69 +1.0
4,348,122 + Ga0059261_4196 0.69 +0.1
4,348,123 - Ga0059261_4196 0.69 -0.9
4,348,123 - Ga0059261_4196 0.69 +1.2
4,348,123 - Ga0059261_4196 0.69 -0.2
4,348,128 + Ga0059261_4196 0.70 -2.6
4,348,129 - Ga0059261_4196 0.70 -0.2
4,348,182 + Ga0059261_4196 0.75 -0.2
4,348,182 + Ga0059261_4196 0.75 +1.5
4,348,182 + Ga0059261_4196 0.75 -0.8
4,348,183 - Ga0059261_4196 0.75 -0.6
4,348,183 - Ga0059261_4196 0.75 -2.0
4,348,183 - Ga0059261_4196 0.75 +1.4
4,348,308 + Ga0059261_4196 0.86 -0.8
4,348,308 + Ga0059261_4196 0.86 +2.4
4,348,311 + Ga0059261_4196 0.87 -1.1
4,348,311 + +0.4
4,348,311 + Ga0059261_4196 0.87 -2.1
4,348,312 - Ga0059261_4196 0.87 -2.6
4,348,312 - Ga0059261_4196 0.87 +1.4
4,348,312 - Ga0059261_4196 0.87 -2.8
4,348,368 + -1.9
4,348,538 + -1.4
4,348,538 + -1.7
4,348,539 - +0.5
4,348,539 - +0.1
4,348,552 + -0.6
4,348,552 + -0.6
4,348,552 + -1.8
4,348,553 - +1.4
4,348,784 + Ga0059261_4197 0.27 -0.9
4,348,784 + Ga0059261_4197 0.27 +0.5
4,348,784 + Ga0059261_4197 0.27 -2.1
4,348,784 + Ga0059261_4197 0.27 -1.6
4,348,784 + Ga0059261_4197 0.27 -1.6
4,348,784 + Ga0059261_4197 0.27 +0.1
4,348,784 + Ga0059261_4197 0.27 +0.6
4,348,785 - Ga0059261_4197 0.27 -0.9
4,348,785 - Ga0059261_4197 0.27 +1.6
4,348,785 - Ga0059261_4197 0.27 -1.7
4,348,785 - Ga0059261_4197 0.27 -0.3
4,348,785 - Ga0059261_4197 0.27 -2.3
4,348,785 - Ga0059261_4197 0.27 +1.1
4,348,785 - Ga0059261_4197 0.27 -1.8
4,348,811 + Ga0059261_4197 0.29 +0.1
4,348,811 + Ga0059261_4197 0.29 -1.7
4,348,811 + Ga0059261_4197 0.29 -2.3
4,348,811 + Ga0059261_4197 0.29 -2.6
4,348,811 + Ga0059261_4197 0.29 +1.1
4,348,811 + Ga0059261_4197 0.29 +1.3
4,348,811 + +1.4
4,348,812 - Ga0059261_4197 0.29 -1.7
4,348,812 - Ga0059261_4197 0.29 +0.3
4,348,812 - +0.4
4,348,883 + Ga0059261_4197 0.35 -1.6
4,348,883 + Ga0059261_4197 0.35 -1.6
4,348,884 - Ga0059261_4197 0.35 +2.1
4,348,884 - Ga0059261_4197 0.35 -0.2
4,349,047 + Ga0059261_4197 0.48 -0.8
4,349,047 + Ga0059261_4197 0.48 -1.9
4,349,047 + Ga0059261_4197 0.48 +1.3
4,349,047 + Ga0059261_4197 0.48 -1.1
4,349,047 + Ga0059261_4197 0.48 +0.9
4,349,047 + Ga0059261_4197 0.48 -0.9
4,349,047 + Ga0059261_4197 0.48 -0.4
4,349,047 + Ga0059261_4197 0.48 -1.5
4,349,048 - Ga0059261_4197 0.49 -0.2
4,349,049 - Ga0059261_4197 0.49 -1.2
4,349,069 - Ga0059261_4197 0.50 -0.0
4,349,150 + Ga0059261_4197 0.57 -1.9
4,349,150 + Ga0059261_4197 0.57 -0.5
4,349,150 + Ga0059261_4197 0.57 -0.4
4,349,150 + Ga0059261_4197 0.57 +0.9
4,349,150 + Ga0059261_4197 0.57 +2.6
4,349,151 - Ga0059261_4197 0.57 -1.1
4,349,151 - Ga0059261_4197 0.57 -1.5
4,349,151 - Ga0059261_4197 0.57 -0.3
4,349,162 - Ga0059261_4197 0.58 +0.4

Or see this region's nucleotide sequence