Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3004

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,138,219	+		Ga0059261_3003	0.57	+0.0
3,138,219	+		Ga0059261_3003	0.57	+1.1
3,138,219	+		Ga0059261_3003	0.57	+3.1
3,138,219	+		Ga0059261_3003	0.57	+2.9
3,138,219	+		Ga0059261_3003	0.57	-1.6
3,138,219	+		Ga0059261_3003	0.57	+0.3
3,138,219	+		Ga0059261_3003	0.57	-3.2
3,138,219	+		Ga0059261_3003	0.57	-1.7
3,138,219	+		Ga0059261_3003	0.57	+1.8
3,138,220	-		Ga0059261_3003	0.57	-1.0
3,138,220	-		Ga0059261_3003	0.57	+1.5
3,138,220	-		Ga0059261_3003	0.57	-1.7
3,138,220	-		Ga0059261_3003	0.57	-0.8
3,138,220	-		Ga0059261_3003	0.57	+1.3
3,138,247	+		Ga0059261_3003	0.59	-2.0
3,138,247	+		Ga0059261_3003	0.59	-2.2
3,138,247	+		Ga0059261_3003	0.59	-1.2
3,138,247	+		Ga0059261_3003	0.59	+0.2
3,138,248	-		Ga0059261_3003	0.59	-0.6
3,138,248	-		Ga0059261_3003	0.59	-2.9
3,138,248	-		Ga0059261_3003	0.59	+0.4
3,138,248	-		Ga0059261_3003	0.59	+1.3
3,138,248	-		Ga0059261_3003	0.59	+1.3
3,138,249	+		Ga0059261_3003	0.59	-3.3
3,138,249	+		Ga0059261_3003	0.59	-1.3
3,138,249	+		Ga0059261_3003	0.59	-0.8
3,138,249	+		Ga0059261_3003	0.59	-1.3
3,138,250	-		Ga0059261_3003	0.59	-0.1
3,138,250	-		Ga0059261_3003	0.59	-0.8
3,138,250	-		Ga0059261_3003	0.59	+0.4
3,138,250	-		Ga0059261_3003	0.59	+2.8
3,138,267	+		Ga0059261_3003	0.60	-0.0
3,138,346	+		Ga0059261_3003	0.65	-1.0
3,138,346	+		Ga0059261_3003	0.65	+1.3
3,138,346	+		Ga0059261_3003	0.65	+3.8
3,138,347	-		Ga0059261_3003	0.65	+0.8
3,138,347	-		Ga0059261_3003	0.65	+0.0
3,138,347	-		Ga0059261_3003	0.65	-1.9
3,138,347	-		Ga0059261_3003	0.65	+2.0
3,138,347	-		Ga0059261_3003	0.65	+0.3
3,138,348	+		Ga0059261_3003	0.65	+0.9
3,138,348	+		Ga0059261_3003	0.65	-0.2
3,138,348	+		Ga0059261_3003	0.65	+3.0
3,138,348	+		Ga0059261_3003	0.65	-0.3
3,138,349	-		Ga0059261_3003	0.65	+3.7
3,138,349	-		Ga0059261_3003	0.65	-1.2
3,138,349	-		Ga0059261_3003	0.65	-1.5
3,138,561	+		Ga0059261_3003	0.79	-2.9
3,138,561	+		Ga0059261_3003	0.79	-0.3
3,138,561	+		Ga0059261_3003	0.79	-1.6
3,138,561	+		Ga0059261_3003	0.79	-0.1
3,138,561	+		Ga0059261_3003	0.79	+0.8
3,138,561	+		Ga0059261_3003	0.79	+0.5
3,138,561	+		Ga0059261_3003	0.79	-1.1
3,138,561	+		Ga0059261_3003	0.79	+0.2
3,138,561	+		Ga0059261_3003	0.79	-1.7
3,138,561	+		Ga0059261_3003	0.79	-1.2
3,138,561	+		Ga0059261_3003	0.79	-0.3
3,138,561	+		Ga0059261_3003	0.79	+1.2
3,138,561	+		Ga0059261_3003	0.79	-1.0
3,138,561	+		Ga0059261_3003	0.79	-1.2
3,138,561	+		Ga0059261_3003	0.79	-2.6
3,138,562	-		Ga0059261_3003	0.79	-1.4
3,138,562	-		Ga0059261_3003	0.79	-1.3
3,138,562	-		Ga0059261_3003	0.79	-0.0
3,138,562	-		Ga0059261_3003	0.79	-0.4
3,138,564	+		Ga0059261_3003	0.79	-0.5
3,138,564	+		Ga0059261_3003	0.79	+0.1
3,138,564	+		Ga0059261_3003	0.79	-2.4
3,138,564	+		Ga0059261_3003	0.79	+0.1
3,138,564	+		Ga0059261_3003	0.79	-1.0
3,138,565	-		Ga0059261_3003	0.79	-0.3
3,138,565	-		Ga0059261_3003	0.79	+0.7
3,138,565	-		Ga0059261_3003	0.79	-1.4
3,138,565	-		Ga0059261_3003	0.79	+1.0
3,138,768	+				-1.1
3,138,768	+				-1.4
3,138,768	+				-0.1
3,138,768	+				+0.9
3,138,768	+				-1.2
3,138,768	+				+0.1
3,138,768	+				-1.6
3,138,768	+				-1.0
3,138,769	-				+0.3
3,138,769	-				-0.5
3,138,769	-				+1.5
3,138,769	-				+1.4
3,138,769	-				-2.3
3,138,769	-				-1.2
3,138,769	-				+3.0
3,138,911	+				+1.0
3,138,911	+				+0.1
3,138,911	+				+0.6
3,138,911	+				-1.3
3,138,912	-				-3.0
3,138,912	-				+2.6
3,138,912	-				-0.1
3,138,912	-				+0.8
3,138,920	+				+1.1
3,138,920	+				-1.2
3,138,921	-				-2.4
3,138,921	-				-0.2
3,139,141	-				-0.8
3,139,141	-				+0.7
3,139,141	-				+0.8
3,139,378	+		Ga0059261_3004	0.16	-0.7
3,139,378	+		Ga0059261_3004	0.16	-0.2
3,139,378	+		Ga0059261_3004	0.16	+0.9
3,139,378	+		Ga0059261_3004	0.16	+0.9
3,139,379	-		Ga0059261_3004	0.16	-0.7
3,139,379	-		Ga0059261_3004	0.16	-0.2
3,139,379	-				+0.5
3,139,379	-		Ga0059261_3004	0.16	-0.1
3,139,379	-		Ga0059261_3004	0.16	+0.1
3,139,392	+		Ga0059261_3004	0.17	+0.5
3,139,392	+		Ga0059261_3004	0.17	+2.1
3,139,393	-		Ga0059261_3004	0.17	-2.1
3,139,398	+		Ga0059261_3004	0.18	-0.8
3,139,398	+				+0.5
3,139,398	+		Ga0059261_3004	0.18	-2.7
3,139,398	+		Ga0059261_3004	0.18	+0.6
3,139,398	+		Ga0059261_3004	0.18	+1.5
3,139,398	+		Ga0059261_3004	0.18	-0.7
3,139,399	-		Ga0059261_3004	0.18	+0.5
3,139,542	+		Ga0059261_3004	0.27	+0.1
3,139,542	+		Ga0059261_3004	0.27	+1.3
3,139,542	+		Ga0059261_3004	0.27	+0.2
3,139,542	+		Ga0059261_3004	0.27	+0.9
3,139,542	+		Ga0059261_3004	0.27	+1.8
3,139,542	+		Ga0059261_3004	0.27	+4.0
3,139,543	-		Ga0059261_3004	0.27	-1.3
3,139,543	-		Ga0059261_3004	0.27	-0.9
3,139,543	-		Ga0059261_3004	0.27	+0.5
3,139,543	-		Ga0059261_3004	0.27	-0.7
3,139,700	+		Ga0059261_3004	0.38	-0.3
3,139,700	+		Ga0059261_3004	0.38	-2.0
3,139,701	-				+2.5
3,139,701	-		Ga0059261_3004	0.38	-0.8
3,139,740	+		Ga0059261_3004	0.40	-1.4
3,139,740	+		Ga0059261_3004	0.40	-0.4
3,139,740	+		Ga0059261_3004	0.40	+1.4
3,139,740	+		Ga0059261_3004	0.40	+0.2
3,139,741	-		Ga0059261_3004	0.40	+0.3
3,139,741	-		Ga0059261_3004	0.40	+1.5
3,139,741	-		Ga0059261_3004	0.40	+0.2
3,139,741	-		Ga0059261_3004	0.40	+2.5
3,139,749	+		Ga0059261_3004	0.41	-0.9
3,139,749	+		Ga0059261_3004	0.41	+0.4
3,139,749	+		Ga0059261_3004	0.41	-1.6
3,139,749	+		Ga0059261_3004	0.41	-0.6
3,139,750	-		Ga0059261_3004	0.41	+0.5
3,139,770	+		Ga0059261_3004	0.42	+1.0
3,139,770	+		Ga0059261_3004	0.42	-0.5
3,139,770	+		Ga0059261_3004	0.42	-2.1
3,139,770	+		Ga0059261_3004	0.42	-0.8
3,139,770	+		Ga0059261_3004	0.42	-0.5
3,139,770	+		Ga0059261_3004	0.42	-0.5
3,139,771	-		Ga0059261_3004	0.42	-0.7
3,139,771	-		Ga0059261_3004	0.42	+0.5
3,139,771	-		Ga0059261_3004	0.42	-1.8
3,139,809	+				+0.9
3,139,809	+		Ga0059261_3004	0.45	-2.8
3,139,809	+		Ga0059261_3004	0.45	-0.1
3,139,809	+		Ga0059261_3004	0.45	+1.2
3,139,809	+		Ga0059261_3004	0.45	-0.1
3,139,809	+		Ga0059261_3004	0.45	+2.5
3,139,809	+		Ga0059261_3004	0.45	-1.1
3,139,809	+		Ga0059261_3004	0.45	-2.0
3,139,810	-		Ga0059261_3004	0.45	+0.2
3,139,810	-		Ga0059261_3004	0.45	-1.8
3,139,810	-		Ga0059261_3004	0.45	-0.8
3,139,810	-		Ga0059261_3004	0.45	-1.8
3,139,810	-		Ga0059261_3004	0.45	-0.3
3,139,810	-		Ga0059261_3004	0.45	+1.2
3,139,810	-		Ga0059261_3004	0.45	-1.8
3,139,810	-		Ga0059261_3004	0.45	-0.5
3,139,810	-		Ga0059261_3004	0.45	-2.0
3,139,811	+		Ga0059261_3004	0.45	+0.9
3,139,811	+		Ga0059261_3004	0.45	-0.5
3,139,811	+		Ga0059261_3004	0.45	-0.6
3,139,812	-		Ga0059261_3004	0.45	-0.4
3,139,905	+		Ga0059261_3004	0.51	+2.1
3,139,905	+		Ga0059261_3004	0.51	-0.3
3,139,905	+		Ga0059261_3004	0.51	-1.9
3,139,906	-		Ga0059261_3004	0.51	+0.5
3,140,133	+		Ga0059261_3004	0.66	-1.0
3,140,133	+		Ga0059261_3004	0.66	+1.5
3,140,133	+		Ga0059261_3004	0.66	-0.4
3,140,133	+		Ga0059261_3004	0.66	+0.1
3,140,133	+		Ga0059261_3004	0.66	+0.2
3,140,133	+		Ga0059261_3004	0.66	+0.9
3,140,133	+		Ga0059261_3004	0.66	-1.3
3,140,133	+		Ga0059261_3004	0.66	+0.5
3,140,133	+		Ga0059261_3004	0.66	-0.2
3,140,133	+		Ga0059261_3004	0.66	-0.5
3,140,133	+		Ga0059261_3004	0.66	+1.4
3,140,133	+		Ga0059261_3004	0.66	+1.0
3,140,133	+		Ga0059261_3004	0.66	-0.1
3,140,133	+		Ga0059261_3004	0.66	+3.3
3,140,134	-		Ga0059261_3004	0.67	+0.9
3,140,134	-		Ga0059261_3004	0.67	+2.5
3,140,134	-		Ga0059261_3004	0.67	-3.0
3,140,134	-		Ga0059261_3004	0.67	-1.5
3,140,134	-		Ga0059261_3004	0.67	+2.0
3,140,134	-		Ga0059261_3004	0.67	+0.5
3,140,134	-		Ga0059261_3004	0.67	+0.9
3,140,134	-		Ga0059261_3004	0.67	+0.4
3,140,134	-		Ga0059261_3004	0.67	-1.0
3,140,134	-		Ga0059261_3004	0.67	-0.7
3,140,135	+		Ga0059261_3004	0.67	+1.0
3,140,135	+		Ga0059261_3004	0.67	-1.3
3,140,135	+		Ga0059261_3004	0.67	-0.2
3,140,135	+		Ga0059261_3004	0.67	-1.6
3,140,135	+		Ga0059261_3004	0.67	-2.1
3,140,135	+		Ga0059261_3004	0.67	+0.5
3,140,135	+		Ga0059261_3004	0.67	-1.0
3,140,135	+		Ga0059261_3004	0.67	+1.4
3,140,135	+		Ga0059261_3004	0.67	-1.0
3,140,135	+		Ga0059261_3004	0.67	+0.9
3,140,135	+		Ga0059261_3004	0.67	+0.9
3,140,135	+		Ga0059261_3004	0.67	-0.1
3,140,135	+		Ga0059261_3004	0.67	-0.3
3,140,135	+		Ga0059261_3004	0.67	-0.6
3,140,135	+		Ga0059261_3004	0.67	-0.1
3,140,135	+		Ga0059261_3004	0.67	-0.7
3,140,136	-				+1.5
3,140,136	-		Ga0059261_3004	0.67	-0.4
3,140,136	-		Ga0059261_3004	0.67	-0.3
3,140,136	-		Ga0059261_3004	0.67	-0.2
3,140,136	-		Ga0059261_3004	0.67	-2.2
3,140,136	-		Ga0059261_3004	0.67	+0.0
3,140,136	-		Ga0059261_3004	0.67	+0.1
3,140,136	-		Ga0059261_3004	0.67	+1.1
3,140,136	-		Ga0059261_3004	0.67	-2.5
3,140,136	-		Ga0059261_3004	0.67	+0.7
3,140,136	-		Ga0059261_3004	0.67	+2.2
3,140,136	-		Ga0059261_3004	0.67	+0.7
3,140,184	-		Ga0059261_3004	0.70	+1.3
3,140,202	+		Ga0059261_3004	0.71	+0.5
3,140,202	+		Ga0059261_3004	0.71	-1.0
3,140,202	+		Ga0059261_3004	0.71	+2.0
3,140,202	+		Ga0059261_3004	0.71	-0.3
3,140,202	+		Ga0059261_3004	0.71	+0.2
3,140,202	+		Ga0059261_3004	0.71	-1.2
3,140,202	+		Ga0059261_3004	0.71	+1.0
3,140,202	+		Ga0059261_3004	0.71	+1.0
3,140,202	+		Ga0059261_3004	0.71	+3.5
3,140,202	+		Ga0059261_3004	0.71	+0.1
3,140,203	-		Ga0059261_3004	0.71	+1.5
3,140,203	-		Ga0059261_3004	0.71	+0.1
3,140,203	-		Ga0059261_3004	0.71	-1.3
3,140,203	-		Ga0059261_3004	0.71	-0.1
3,140,203	-		Ga0059261_3004	0.71	+1.9
3,140,203	-		Ga0059261_3004	0.71	+0.3
3,140,203	-		Ga0059261_3004	0.71	-1.6
3,140,203	-		Ga0059261_3004	0.71	-1.1
3,140,203	-		Ga0059261_3004	0.71	+0.0
3,140,203	-		Ga0059261_3004	0.71	-0.3
3,140,203	-		Ga0059261_3004	0.71	-2.4
3,140,203	-		Ga0059261_3004	0.71	-2.2
3,140,203	-		Ga0059261_3004	0.71	-0.3
3,140,203	-		Ga0059261_3004	0.71	+0.9
3,140,203	-		Ga0059261_3004	0.71	-1.0
3,140,203	-		Ga0059261_3004	0.71	+0.8
3,140,203	-		Ga0059261_3004	0.71	-0.1
3,140,204	+		Ga0059261_3004	0.71	-0.8
3,140,204	+		Ga0059261_3004	0.71	+0.5
3,140,204	+		Ga0059261_3004	0.71	+2.1
3,140,204	+		Ga0059261_3004	0.71	+0.8
3,140,204	+		Ga0059261_3004	0.71	+0.0
3,140,205	-		Ga0059261_3004	0.71	+0.2
3,140,205	-		Ga0059261_3004	0.71	-1.0
3,140,205	-		Ga0059261_3004	0.71	+0.4
3,140,205	-		Ga0059261_3004	0.71	+0.3
3,140,205	-		Ga0059261_3004	0.71	+0.9
3,140,205	-		Ga0059261_3004	0.71	+0.2
3,140,205	-		Ga0059261_3004	0.71	-0.7
3,140,205	-		Ga0059261_3004	0.71	+4.0
3,140,225	+		Ga0059261_3004	0.73	-0.1
3,140,268	+		Ga0059261_3004	0.75	+1.7
3,140,268	+		Ga0059261_3004	0.75	+0.2
3,140,268	+		Ga0059261_3004	0.75	-0.7
3,140,268	+		Ga0059261_3004	0.75	+4.8
3,140,268	+		Ga0059261_3004	0.75	-1.0
3,140,268	+		Ga0059261_3004	0.75	-0.7
3,140,268	+		Ga0059261_3004	0.75	+1.3
3,140,268	+		Ga0059261_3004	0.75	-0.3
3,140,269	-		Ga0059261_3004	0.76	-1.5
3,140,269	-		Ga0059261_3004	0.76	-0.3
3,140,269	-		Ga0059261_3004	0.76	+0.8
3,140,269	-		Ga0059261_3004	0.76	-1.1
3,140,269	-		Ga0059261_3004	0.76	-1.8
3,140,269	-		Ga0059261_3004	0.76	-0.7
3,140,269	-		Ga0059261_3004	0.76	-1.3
3,140,269	-		Ga0059261_3004	0.76	+1.5
3,140,269	-		Ga0059261_3004	0.76	+0.3
3,140,269	-		Ga0059261_3004	0.76	+0.9
3,140,370	+		Ga0059261_3004	0.82	+0.2
3,140,370	+		Ga0059261_3004	0.82	-0.2
3,140,370	+		Ga0059261_3004	0.82	-0.8
3,140,371	-		Ga0059261_3004	0.82	-0.6
3,140,371	-		Ga0059261_3004	0.82	-0.6
3,140,371	-		Ga0059261_3004	0.82	+0.2
3,140,371	-		Ga0059261_3004	0.82	+0.2
3,140,391	+		Ga0059261_3004	0.84	+2.6
3,140,391	+		Ga0059261_3004	0.84	-0.6
3,140,391	+		Ga0059261_3004	0.84	-2.9
3,140,391	+		Ga0059261_3004	0.84	-0.8
3,140,391	+		Ga0059261_3004	0.84	+0.7
3,140,392	-		Ga0059261_3004	0.84	+0.6
3,140,392	-		Ga0059261_3004	0.84	-0.5
3,140,392	-		Ga0059261_3004	0.84	+1.4
3,140,392	-		Ga0059261_3004	0.84	+1.6
3,140,392	-		Ga0059261_3004	0.84	-1.3
3,140,392	-		Ga0059261_3004	0.84	-0.8
3,140,392	-		Ga0059261_3004	0.84	-1.1
3,140,392	-		Ga0059261_3004	0.84	+0.2
3,140,392	-		Ga0059261_3004	0.84	-1.7
3,140,392	-		Ga0059261_3004	0.84	-1.3
3,140,393	+		Ga0059261_3004	0.84	-0.7
3,140,415	+		Ga0059261_3004	0.85	-1.3
3,140,415	+		Ga0059261_3004	0.85	-1.8
3,140,416	-		Ga0059261_3004	0.85	-0.5
3,140,416	-		Ga0059261_3004	0.85	-1.3
3,140,416	-		Ga0059261_3004	0.85	-1.8
3,140,481	+		Ga0059261_3004	0.90	-1.9
3,140,481	+				+0.2
3,140,482	-		Ga0059261_3004	0.90	-2.7
3,140,482	-		Ga0059261_3004	0.90	+0.7
3,140,482	-		Ga0059261_3004	0.90	-0.6
3,140,482	-		Ga0059261_3004	0.90	+7.0
3,140,482	-		Ga0059261_3004	0.90	-2.2
3,140,482	-		Ga0059261_3004	0.90	+0.2
3,140,482	-		Ga0059261_3004	0.90	-1.0
3,140,508	+				+0.7
3,140,509	-				+0.5
3,140,545	-				-0.9
3,140,545	-				-2.4
3,140,545	-				+0.2
3,140,545	-				+1.5
3,140,545	-				+0.1
3,140,562	+				-0.2
3,140,562	+				+0.1
3,140,563	-				+0.5
3,140,563	-				+2.6
3,140,748	+				+0.5
3,140,748	+				-0.3
3,140,748	+				+0.9
3,140,748	+				-0.2
3,140,748	+				-0.0
3,140,749	-				+1.7
3,140,749	-				+1.7
3,140,749	-				-1.0
3,140,749	-				+0.5
3,140,777	+				+0.4
3,140,777	+				-0.3
3,140,777	+				+1.2
3,140,777	+				+1.5
3,140,777	+				-2.9
3,140,778	-				+0.4
3,140,778	-				-1.8
3,140,778	-				-1.6
3,140,778	-				+1.5
3,140,843	-				-0.4
3,141,160	+		Ga0059261_3005	0.13	-0.6
3,141,161	-		Ga0059261_3005	0.13	-0.4
3,141,161	-		Ga0059261_3005	0.13	-1.1
3,141,207	+		Ga0059261_3005	0.15	-0.3
3,141,208	-		Ga0059261_3005	0.15	-0.1
3,141,258	+		Ga0059261_3005	0.17	-1.0
3,141,258	+		Ga0059261_3005	0.17	+0.9
3,141,258	+		Ga0059261_3005	0.17	-1.2
3,141,259	-		Ga0059261_3005	0.17	-1.0
3,141,259	-		Ga0059261_3005	0.17	+0.1
3,141,259	-		Ga0059261_3005	0.17	-0.1
3,141,306	-		Ga0059261_3005	0.19	-0.8
3,141,341	+		Ga0059261_3005	0.20	-3.5
3,141,341	+		Ga0059261_3005	0.20	-1.7
3,141,341	+		Ga0059261_3005	0.20	+0.9
3,141,342	-		Ga0059261_3005	0.20	-1.3
3,141,342	-		Ga0059261_3005	0.20	+0.9
3,141,342	-		Ga0059261_3005	0.20	-0.9
3,141,369	+		Ga0059261_3005	0.21	-0.7
3,141,369	+		Ga0059261_3005	0.21	-2.2
3,141,369	+		Ga0059261_3005	0.21	-0.0
3,141,369	+		Ga0059261_3005	0.21	-0.1
3,141,370	-		Ga0059261_3005	0.21	+2.5
3,141,438	+		Ga0059261_3005	0.24	-1.1
3,141,439	-		Ga0059261_3005	0.24	-1.2
3,141,439	-				+0.9
3,141,509	+		Ga0059261_3005	0.26	+2.0