Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0850

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0848 and Ga0059261_0849 overlap by 23 nucleotidesGa0059261_0849 and Ga0059261_0850 overlap by 16 nucleotidesGa0059261_0850 and Ga0059261_0851 are separated by 8 nucleotides Ga0059261_0848: Ga0059261_0848 - transcriptional regulator, TetR family, at 888,904 to 890,148 _0848 Ga0059261_0849: Ga0059261_0849 - transcriptional regulator, TetR family, at 890,126 to 890,854 _0849 Ga0059261_0850: Ga0059261_0850 - hypothetical protein, at 890,839 to 891,246 _0850 Ga0059261_0851: Ga0059261_0851 - Alpha/beta hydrolase family, at 891,255 to 892,214 _0851 Position (kb) 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 889.943 kb on - strandat 890.095 kb on + strandat 890.095 kb on + strandat 890.096 kb on - strandat 890.111 kb on + strandat 890.111 kb on + strandat 890.112 kb on - strandat 890.112 kb on - strandat 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.293 kb on + strand, within Ga0059261_0849at 890.294 kb on - strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.831 kb on - strandat 890.831 kb on - strandat 890.831 kb on - strandat 891.046 kb on - strand, within Ga0059261_0850at 891.046 kb on - strand, within Ga0059261_0850at 891.057 kb on + strand, within Ga0059261_0850at 891.388 kb on + strand, within Ga0059261_0851at 891.388 kb on + strand, within Ga0059261_0851at 891.389 kb on - strand, within Ga0059261_0851at 891.389 kb on - strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.555 kb on - strand, within Ga0059261_0851at 891.601 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851at 891.869 kb on - strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 892.008 kb on - strand, within Ga0059261_0851at 892.021 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.106 kb on - strand, within Ga0059261_0851at 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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889,943 - +0.4
890,095 + +0.7
890,095 + -1.5
890,096 - +0.7
890,111 + -0.4
890,111 + +2.4
890,112 - -1.2
890,112 - -0.7
890,291 + Ga0059261_0849 0.23 -1.8
890,291 + Ga0059261_0849 0.23 +2.1
890,291 + Ga0059261_0849 0.23 -1.8
890,292 - Ga0059261_0849 0.23 -0.8
890,292 - Ga0059261_0849 0.23 +1.4
890,292 - Ga0059261_0849 0.23 +1.1
890,292 - Ga0059261_0849 0.23 +2.6
890,293 + Ga0059261_0849 0.23 -1.2
890,294 - Ga0059261_0849 0.23 -0.6
890,405 + Ga0059261_0849 0.38 +0.8
890,405 + Ga0059261_0849 0.38 +1.8
890,406 - Ga0059261_0849 0.38 +0.4
890,406 - Ga0059261_0849 0.38 +1.8
890,830 + +0.6
890,830 + -1.4
890,830 + +0.8
890,830 + -0.1
890,830 + -1.8
890,830 + -0.7
890,830 + +2.1
890,830 + -1.0
890,830 + -0.8
890,831 - +1.5
890,831 - -1.2
890,831 - -0.6
891,046 - Ga0059261_0850 0.51 +0.4
891,046 - Ga0059261_0850 0.51 -0.9
891,057 + Ga0059261_0850 0.53 +1.7
891,388 + Ga0059261_0851 0.14 -0.3
891,388 + Ga0059261_0851 0.14 -3.0
891,389 - Ga0059261_0851 0.14 +1.6
891,389 - Ga0059261_0851 0.14 +0.3
891,394 + Ga0059261_0851 0.14 +0.5
891,394 + Ga0059261_0851 0.14 -1.1
891,394 + Ga0059261_0851 0.14 +1.6
891,394 + Ga0059261_0851 0.14 -0.1
891,394 + Ga0059261_0851 0.14 -0.4
891,394 + Ga0059261_0851 0.14 +0.1
891,394 + Ga0059261_0851 0.14 -1.8
891,395 - Ga0059261_0851 0.15 -0.3
891,395 - Ga0059261_0851 0.15 +0.1
891,395 - Ga0059261_0851 0.15 -0.2
891,520 + Ga0059261_0851 0.28 -1.5
891,520 + Ga0059261_0851 0.28 +2.4
891,520 + Ga0059261_0851 0.28 -1.6
891,520 + Ga0059261_0851 0.28 +2.0
891,521 - Ga0059261_0851 0.28 +0.3
891,521 - Ga0059261_0851 0.28 +0.7
891,524 - Ga0059261_0851 0.28 -0.9
891,524 - Ga0059261_0851 0.28 -1.6
891,524 - Ga0059261_0851 0.28 +0.1
891,554 + Ga0059261_0851 0.31 -0.2
891,554 + Ga0059261_0851 0.31 +1.1
891,555 - Ga0059261_0851 0.31 +0.3
891,601 + Ga0059261_0851 0.36 -0.7
891,799 + Ga0059261_0851 0.57 -0.7
891,799 + Ga0059261_0851 0.57 +0.8
891,799 + Ga0059261_0851 0.57 +0.3
891,799 + Ga0059261_0851 0.57 +0.4
891,799 + Ga0059261_0851 0.57 +0.1
891,799 + Ga0059261_0851 0.57 -0.6
891,799 + Ga0059261_0851 0.57 +5.2
891,800 - Ga0059261_0851 0.57 -0.8
891,800 - Ga0059261_0851 0.57 +1.0
891,869 - Ga0059261_0851 0.64 +1.5
891,934 + Ga0059261_0851 0.71 -1.0
891,934 + Ga0059261_0851 0.71 -1.7
891,934 + Ga0059261_0851 0.71 +0.4
891,934 + Ga0059261_0851 0.71 -0.4
891,935 - Ga0059261_0851 0.71 -0.6
891,935 - Ga0059261_0851 0.71 -1.5
891,935 - Ga0059261_0851 0.71 +0.4
891,935 - Ga0059261_0851 0.71 -0.8
891,935 - Ga0059261_0851 0.71 -2.6
891,940 + Ga0059261_0851 0.71 -2.2
891,940 + Ga0059261_0851 0.71 -1.3
891,940 + Ga0059261_0851 0.71 -1.4
891,940 + Ga0059261_0851 0.71 +3.0
891,940 + Ga0059261_0851 0.71 +0.0
891,940 + Ga0059261_0851 0.71 -1.0
891,940 + Ga0059261_0851 0.71 -0.9
891,940 + Ga0059261_0851 0.71 -1.9
891,940 + Ga0059261_0851 0.71 +2.1
891,940 + Ga0059261_0851 0.71 -0.5
891,940 + Ga0059261_0851 0.71 +4.2
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 -2.8
891,940 + Ga0059261_0851 0.71 -0.5
891,940 + Ga0059261_0851 0.71 +0.5
891,940 + Ga0059261_0851 0.71 +1.0
891,940 + Ga0059261_0851 0.71 +0.7
891,940 + Ga0059261_0851 0.71 +0.3
891,940 + Ga0059261_0851 0.71 +0.6
891,940 + Ga0059261_0851 0.71 +0.4
891,940 + Ga0059261_0851 0.71 +2.5
891,940 + Ga0059261_0851 0.71 -0.3
891,941 - Ga0059261_0851 0.71 +2.6
891,941 - Ga0059261_0851 0.71 +0.3
891,941 - Ga0059261_0851 0.71 -2.0
891,941 - Ga0059261_0851 0.71 +0.3
891,941 - Ga0059261_0851 0.71 -1.8
891,941 - Ga0059261_0851 0.71 -0.3
891,941 - Ga0059261_0851 0.71 -2.2
891,941 - Ga0059261_0851 0.71 -0.3
891,941 - Ga0059261_0851 0.71 +1.6
891,941 - Ga0059261_0851 0.71 -1.2
891,941 - Ga0059261_0851 0.71 -1.7
891,941 - Ga0059261_0851 0.71 -1.2
891,941 - Ga0059261_0851 0.71 -0.4
892,008 - Ga0059261_0851 0.78 -0.7
892,021 + Ga0059261_0851 0.80 +1.0
892,105 + Ga0059261_0851 0.89 -0.6
892,105 + Ga0059261_0851 0.89 -1.1
892,105 + Ga0059261_0851 0.89 -2.0
892,105 + Ga0059261_0851 0.89 +0.7
892,105 + Ga0059261_0851 0.89 +2.1
892,105 + Ga0059261_0851 0.89 +1.1
892,106 - Ga0059261_0851 0.89 -0.5
892,203 + -2.6
892,203 + +0.8
892,203 + -0.6
892,203 + +2.3
892,203 + +1.6
892,203 + -0.8
892,204 - +3.2
892,204 - -0.3
892,204 - -2.5
892,204 - +0.5

Or see this region's nucleotide sequence