Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0843

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0842 and Ga0059261_0843 are separated by 52 nucleotidesGa0059261_0843 and Ga0059261_0844 overlap by 1 nucleotidesGa0059261_0844 and Ga0059261_0845 are separated by 1 nucleotides Ga0059261_0842: Ga0059261_0842 - TonB family C-terminal domain, at 882,474 to 883,580 _0842 Ga0059261_0843: Ga0059261_0843 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 883,633 to 884,433 _0843 Ga0059261_0844: Ga0059261_0844 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 884,433 to 885,197 _0844 Ga0059261_0845: Ga0059261_0845 - Predicted aminoglycoside phosphotransferase, at 885,199 to 886,260 _0845 Position (kb) 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.735 kb on + strand, within Ga0059261_0842at 882.736 kb on - strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strandat 882.926 kb on + strand, within Ga0059261_0842at 882.926 kb on + strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.303 kb on + strand, within Ga0059261_0842at 883.304 kb on - strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strandat 883.399 kb on + strandat 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.403 kb on + strand, within Ga0059261_0842at 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.653 kb on - strandat 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strandat 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.970 kb on + strand, within Ga0059261_0843at 883.971 kb on - strand, within Ga0059261_0843at 883.980 kb on + strand, within Ga0059261_0843at 884.139 kb on + strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.195 kb on + strand, within Ga0059261_0843at 884.195 kb on + strand, within Ga0059261_0843at 884.196 kb on - strand, within Ga0059261_0843at 884.401 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.503 kb on + strandat 884.503 kb on + strandat 884.503 kb on + strandat 884.636 kb on + strand, within Ga0059261_0844at 884.637 kb on - strand, within Ga0059261_0844at 884.665 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.677 kb on + strand, within Ga0059261_0844at 884.678 kb on - strand, within Ga0059261_0844at 884.678 kb on - strand, within Ga0059261_0844at 884.678 kb on - strand, within Ga0059261_0844at 884.678 kb on - strand, within Ga0059261_0844at 884.719 kb on + strand, within Ga0059261_0844at 884.719 kb on + strand, within Ga0059261_0844at 884.719 kb on + strand, within Ga0059261_0844at 884.719 kb on + strand, within Ga0059261_0844at 884.720 kb on - strand, within Ga0059261_0844at 884.720 kb on - strand, within Ga0059261_0844at 884.720 kb on - strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strandat 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.840 kb on + strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.841 kb on - strand, within Ga0059261_0844at 884.896 kb on + strand, within Ga0059261_0844at 884.896 kb on + strand, within Ga0059261_0844at 884.897 kb on - strand, within Ga0059261_0844at 884.897 kb on - strand, within Ga0059261_0844at 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.200 kb on + strandat 885.201 kb on - strandat 885.201 kb on - strandat 885.360 kb on - strand, within Ga0059261_0845

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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882,670 + Ga0059261_0842 0.18 +0.8
882,670 + Ga0059261_0842 0.18 +0.0
882,670 + Ga0059261_0842 0.18 +0.7
882,670 + Ga0059261_0842 0.18 -0.2
882,670 + Ga0059261_0842 0.18 -2.2
882,671 - Ga0059261_0842 0.18 -0.2
882,671 - Ga0059261_0842 0.18 -1.7
882,671 - Ga0059261_0842 0.18 -1.4
882,671 - Ga0059261_0842 0.18 -0.2
882,735 + Ga0059261_0842 0.24 +0.5
882,736 - Ga0059261_0842 0.24 -2.0
882,844 + Ga0059261_0842 0.33 -0.8
882,844 + Ga0059261_0842 0.33 +0.4
882,844 + Ga0059261_0842 0.33 -0.4
882,844 + Ga0059261_0842 0.33 +0.1
882,845 - Ga0059261_0842 0.34 +0.5
882,845 - Ga0059261_0842 0.34 +0.6
882,845 - Ga0059261_0842 0.34 -1.6
882,850 + Ga0059261_0842 0.34 -1.4
882,850 + Ga0059261_0842 0.34 -0.7
882,850 + Ga0059261_0842 0.34 +1.4
882,850 + Ga0059261_0842 0.34 -0.6
882,850 + Ga0059261_0842 0.34 -1.9
882,850 + Ga0059261_0842 0.34 -1.4
882,851 - Ga0059261_0842 0.34 +0.3
882,851 - Ga0059261_0842 0.34 -0.7
882,851 - Ga0059261_0842 0.34 -2.7
882,851 - Ga0059261_0842 0.34 +1.1
882,851 - +1.4
882,926 + Ga0059261_0842 0.41 -0.9
882,926 + Ga0059261_0842 0.41 +0.5
882,927 - Ga0059261_0842 0.41 +0.6
882,927 - Ga0059261_0842 0.41 -0.6
882,927 - Ga0059261_0842 0.41 -1.8
882,927 - Ga0059261_0842 0.41 -1.0
883,000 + Ga0059261_0842 0.48 -0.6
883,000 + Ga0059261_0842 0.48 +0.7
883,000 + Ga0059261_0842 0.48 +0.9
883,000 + Ga0059261_0842 0.48 -2.0
883,000 + Ga0059261_0842 0.48 -0.5
883,001 - Ga0059261_0842 0.48 -1.0
883,001 - Ga0059261_0842 0.48 -1.2
883,001 - Ga0059261_0842 0.48 +1.7
883,001 - Ga0059261_0842 0.48 +1.3
883,001 - Ga0059261_0842 0.48 -0.2
883,303 + Ga0059261_0842 0.75 -0.6
883,304 - Ga0059261_0842 0.75 +0.8
883,399 + Ga0059261_0842 0.84 +1.4
883,399 + Ga0059261_0842 0.84 +0.1
883,399 + Ga0059261_0842 0.84 +0.2
883,399 + Ga0059261_0842 0.84 +1.4
883,399 + Ga0059261_0842 0.84 +3.2
883,399 + Ga0059261_0842 0.84 +1.4
883,399 + Ga0059261_0842 0.84 -0.4
883,399 + +0.8
883,399 + +0.4
883,399 + Ga0059261_0842 0.84 -1.0
883,399 + Ga0059261_0842 0.84 +1.5
883,399 + Ga0059261_0842 0.84 -1.0
883,400 - Ga0059261_0842 0.84 -0.5
883,400 - Ga0059261_0842 0.84 -3.2
883,400 - Ga0059261_0842 0.84 -1.2
883,400 - Ga0059261_0842 0.84 +1.0
883,400 - Ga0059261_0842 0.84 -1.5
883,400 - Ga0059261_0842 0.84 -1.2
883,400 - Ga0059261_0842 0.84 -0.4
883,403 + Ga0059261_0842 0.84 -1.0
883,565 + +0.1
883,565 + +3.7
883,565 + -0.9
883,565 + +0.4
883,565 + -0.4
883,565 + +2.1
883,565 + -1.7
883,565 + +1.0
883,566 - -3.3
883,566 - +0.8
883,566 - +3.8
883,566 - +0.3
883,566 - -0.3
883,566 - +0.3
883,566 - +3.7
883,566 - +0.4
883,566 - +0.9
883,653 - +0.1
883,721 + Ga0059261_0843 0.11 +0.6
883,721 + Ga0059261_0843 0.11 -1.6
883,721 + Ga0059261_0843 0.11 -1.0
883,721 + Ga0059261_0843 0.11 -2.2
883,722 - Ga0059261_0843 0.11 -0.6
883,722 - Ga0059261_0843 0.11 -2.7
883,722 - Ga0059261_0843 0.11 +0.6
883,722 - +0.8
883,722 - Ga0059261_0843 0.11 -0.5
883,722 - Ga0059261_0843 0.11 -2.7
883,722 - Ga0059261_0843 0.11 +0.4
883,722 - Ga0059261_0843 0.11 +1.8
883,722 - Ga0059261_0843 0.11 -0.4
883,722 - Ga0059261_0843 0.11 +0.8
883,970 + Ga0059261_0843 0.42 -1.4
883,971 - Ga0059261_0843 0.42 +1.7
883,980 + Ga0059261_0843 0.43 +1.9
884,139 + Ga0059261_0843 0.63 +0.3
884,140 - Ga0059261_0843 0.63 -0.3
884,140 - Ga0059261_0843 0.63 -0.2
884,140 - Ga0059261_0843 0.63 +0.8
884,195 + Ga0059261_0843 0.70 +1.6
884,195 + Ga0059261_0843 0.70 +1.6
884,196 - Ga0059261_0843 0.70 -0.3
884,401 + +0.8
884,479 + +1.4
884,479 + -1.8
884,479 + -0.9
884,479 + -2.3
884,479 + +2.4
884,479 + -1.5
884,480 - -0.6
884,480 - +1.0
884,480 - -1.1
884,480 - -1.9
884,480 - -0.2
884,480 - -0.4
884,480 - -0.7
884,503 + +0.4
884,503 + -0.8
884,503 + -0.9
884,636 + Ga0059261_0844 0.27 +1.1
884,637 - Ga0059261_0844 0.27 -0.4
884,665 + Ga0059261_0844 0.30 -0.1
884,677 + Ga0059261_0844 0.32 +0.8
884,677 + Ga0059261_0844 0.32 +0.8
884,677 + Ga0059261_0844 0.32 +4.8
884,677 + Ga0059261_0844 0.32 +0.9
884,677 + Ga0059261_0844 0.32 -2.5
884,677 + Ga0059261_0844 0.32 +0.1
884,678 - Ga0059261_0844 0.32 +0.1
884,678 - Ga0059261_0844 0.32 +0.1
884,678 - Ga0059261_0844 0.32 -0.3
884,678 - Ga0059261_0844 0.32 +0.7
884,719 + Ga0059261_0844 0.37 -0.9
884,719 + Ga0059261_0844 0.37 -1.9
884,719 + Ga0059261_0844 0.37 -0.9
884,719 + Ga0059261_0844 0.37 +0.4
884,720 - Ga0059261_0844 0.38 -0.4
884,720 - Ga0059261_0844 0.38 -0.3
884,720 - Ga0059261_0844 0.38 +0.8
884,840 + Ga0059261_0844 0.53 -0.3
884,840 + +0.1
884,840 + Ga0059261_0844 0.53 +0.4
884,840 + Ga0059261_0844 0.53 -1.4
884,840 + Ga0059261_0844 0.53 +0.2
884,840 + Ga0059261_0844 0.53 -0.8
884,840 + Ga0059261_0844 0.53 +4.9
884,840 + Ga0059261_0844 0.53 +0.7
884,840 + Ga0059261_0844 0.53 -1.8
884,840 + Ga0059261_0844 0.53 +1.1
884,841 - Ga0059261_0844 0.53 -2.8
884,841 - Ga0059261_0844 0.53 -0.8
884,841 - Ga0059261_0844 0.53 -2.9
884,841 - Ga0059261_0844 0.53 -0.1
884,841 - Ga0059261_0844 0.53 -0.8
884,841 - Ga0059261_0844 0.53 +0.9
884,841 - Ga0059261_0844 0.53 +0.3
884,896 + Ga0059261_0844 0.61 -0.6
884,896 + Ga0059261_0844 0.61 -1.1
884,897 - Ga0059261_0844 0.61 -0.3
884,897 - Ga0059261_0844 0.61 +1.0
885,200 + -1.5
885,200 + +0.5
885,200 + +1.0
885,200 + +2.7
885,200 + +1.7
885,200 + +2.7
885,200 + -0.8
885,200 + -1.8
885,200 + -2.3
885,200 + -1.1
885,201 - +2.1
885,201 - -0.6
885,360 - Ga0059261_0845 0.15 -1.7

Or see this region's nucleotide sequence