Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0670 and Ga0059261_0671 are separated by 356 nucleotides Ga0059261_0671 and Ga0059261_0672 are separated by 48 nucleotides Ga0059261_0672 and Ga0059261_0673 overlap by 8 nucleotides
Ga0059261_0670: Ga0059261_0670 - hypothetical protein, at 707,332 to 708,441
_0670
Ga0059261_0671: Ga0059261_0671 - Uncharacterized conserved protein, at 708,798 to 709,031
_0671
Ga0059261_0672: Ga0059261_0672 - Domain of unknown function (DUF955), at 709,080 to 709,670
_0672
Ga0059261_0673: Ga0059261_0673 - hypothetical protein, at 709,663 to 710,769
_0673
Position (kb) 709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 708.251 kb on + strand, within Ga0059261_0670 at 708.251 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.360 kb on - strand at 708.475 kb on + strand at 708.475 kb on + strand at 708.476 kb on - strand at 708.476 kb on - strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.942 kb on + strand, within Ga0059261_0671 at 708.942 kb on + strand, within Ga0059261_0671 at 708.943 kb on - strand, within Ga0059261_0671 at 708.943 kb on - strand, within Ga0059261_0671 at 708.948 kb on + strand, within Ga0059261_0671 at 708.949 kb on - strand, within Ga0059261_0671 at 708.949 kb on - strand, within Ga0059261_0671 at 708.949 kb on - strand at 708.984 kb on + strand, within Ga0059261_0671 at 709.103 kb on - strand at 709.104 kb on + strand at 709.104 kb on + strand at 709.105 kb on - strand at 709.105 kb on - strand at 709.105 kb on - strand at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.165 kb on + strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.247 kb on - strand, within Ga0059261_0672 at 709.291 kb on + strand, within Ga0059261_0672 at 709.292 kb on - strand, within Ga0059261_0672 at 709.320 kb on + strand, within Ga0059261_0672 at 709.320 kb on + strand, within Ga0059261_0672 at 709.321 kb on - strand, within Ga0059261_0672 at 709.649 kb on - strand at 709.719 kb on + strand at 709.724 kb on + strand at 709.724 kb on + strand at 709.765 kb on - strand at 709.765 kb on - strand at 709.901 kb on - strand, within Ga0059261_0673 at 709.947 kb on - strand, within Ga0059261_0673 at 710.060 kb on + strand, within Ga0059261_0673 at 710.060 kb on + strand, within Ga0059261_0673 at 710.109 kb on - strand, within Ga0059261_0673 at 710.193 kb on + strand, within Ga0059261_0673 at 710.231 kb on + strand, within Ga0059261_0673 at 710.312 kb on - strand, within Ga0059261_0673 at 710.317 kb on - strand, within Ga0059261_0673 at 710.617 kb on + strand, within Ga0059261_0673 at 710.618 kb on - strand, within Ga0059261_0673 at 710.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 708,251 + Ga0059261_0670 0.83 -0.5 708,251 + Ga0059261_0670 0.83 -0.9 708,270 + Ga0059261_0670 0.85 +1.4 708,270 + Ga0059261_0670 0.85 -0.4 708,270 + Ga0059261_0670 0.85 -1.8 708,271 - Ga0059261_0670 0.85 -0.2 708,271 - Ga0059261_0670 0.85 -0.5 708,271 - Ga0059261_0670 0.85 +0.9 708,271 - Ga0059261_0670 0.85 +0.2 708,360 - +2.5 708,475 + -0.3 708,475 + -2.6 708,476 - -0.5 708,476 - +4.0 708,479 + +3.3 708,479 + -1.1 708,479 + +1.6 708,479 + +1.4 708,942 + Ga0059261_0671 0.62 +0.6 708,942 + Ga0059261_0671 0.62 -2.7 708,943 - Ga0059261_0671 0.62 +0.0 708,943 - Ga0059261_0671 0.62 +0.1 708,948 + Ga0059261_0671 0.64 +0.6 708,949 - Ga0059261_0671 0.65 -1.6 708,949 - Ga0059261_0671 0.65 -1.6 708,949 - +0.8 708,984 + Ga0059261_0671 0.79 -1.3 709,103 - -2.1 709,104 + -0.4 709,104 + -2.0 709,105 - -0.6 709,105 - +0.7 709,105 - +1.4 709,140 + Ga0059261_0672 0.10 +0.9 709,140 + Ga0059261_0672 0.10 -0.4 709,140 + Ga0059261_0672 0.10 +0.7 709,140 + Ga0059261_0672 0.10 +0.1 709,140 + Ga0059261_0672 0.10 +0.2 709,140 + Ga0059261_0672 0.10 -1.3 709,140 + Ga0059261_0672 0.10 -0.3 709,140 + Ga0059261_0672 0.10 -0.6 709,141 - Ga0059261_0672 0.10 +0.2 709,141 - Ga0059261_0672 0.10 -0.9 709,141 - Ga0059261_0672 0.10 -1.2 709,141 - Ga0059261_0672 0.10 -0.3 709,141 - Ga0059261_0672 0.10 +0.8 709,141 - Ga0059261_0672 0.10 +0.8 709,141 - Ga0059261_0672 0.10 +0.8 709,141 - Ga0059261_0672 0.10 +1.6 709,165 + Ga0059261_0672 0.14 -1.5 709,166 - Ga0059261_0672 0.15 +0.2 709,166 - Ga0059261_0672 0.15 +3.4 709,166 - Ga0059261_0672 0.15 -0.5 709,247 - Ga0059261_0672 0.28 +1.3 709,291 + Ga0059261_0672 0.36 +0.2 709,292 - Ga0059261_0672 0.36 -1.3 709,320 + Ga0059261_0672 0.41 -1.8 709,320 + Ga0059261_0672 0.41 +0.2 709,321 - Ga0059261_0672 0.41 -0.1 709,649 - +1.8 709,719 + +1.8 709,724 + +0.1 709,724 + +0.1 709,765 - -1.3 709,765 - +1.6 709,901 - Ga0059261_0673 0.21 -0.1 709,947 - Ga0059261_0673 0.26 -0.2 710,060 + Ga0059261_0673 0.36 -0.6 710,060 + Ga0059261_0673 0.36 -0.8 710,109 - Ga0059261_0673 0.40 -0.3 710,193 + Ga0059261_0673 0.48 -0.2 710,231 + Ga0059261_0673 0.51 +0.8 710,312 - Ga0059261_0673 0.59 +0.7 710,317 - Ga0059261_0673 0.59 +0.3 710,617 + Ga0059261_0673 0.86 -1.1 710,618 - Ga0059261_0673 0.86 +1.7 710,663 - +0.8
Or see this region's nucleotide sequence