Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0337

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0335 and Ga0059261_0336 are separated by 105 nucleotidesGa0059261_0336 and Ga0059261_0337 are separated by 21 nucleotidesGa0059261_0337 and Ga0059261_0338 are separated by 84 nucleotides Ga0059261_0335: Ga0059261_0335 - Bacterial regulatory proteins, luxR family, at 319,813 to 320,256 _0335 Ga0059261_0336: Ga0059261_0336 - Protein of unknown function (DUF4199), at 320,362 to 320,904 _0336 Ga0059261_0337: Ga0059261_0337 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 320,926 to 322,545 _0337 Ga0059261_0338: Ga0059261_0338 - DNA-directed DNA polymerase III (polc), at 322,630 to 326,112 _0338 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 319.948 kb on + strand, within Ga0059261_0335at 319.948 kb on + strand, within Ga0059261_0335at 319.948 kb on + strand, within Ga0059261_0335at 319.948 kb on + strand, within Ga0059261_0335at 319.948 kb on + strand, within Ga0059261_0335at 319.949 kb on - strand, within Ga0059261_0335at 319.949 kb on - strand, within Ga0059261_0335at 319.949 kb on - strand, within Ga0059261_0335at 319.949 kb on - strand, within Ga0059261_0335at 320.145 kb on + strand, within Ga0059261_0335at 320.145 kb on + strand, within Ga0059261_0335at 320.145 kb on + strand, within Ga0059261_0335at 320.145 kb on + strand, within Ga0059261_0335at 320.146 kb on - strand, within Ga0059261_0335at 320.356 kb on + strandat 320.356 kb on + strandat 320.356 kb on + strandat 320.357 kb on - strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.361 kb on + strandat 320.362 kb on - strandat 320.362 kb on - strandat 320.362 kb on - strandat 320.383 kb on + strandat 320.383 kb on + strandat 320.383 kb on + strandat 320.383 kb on + strandat 320.383 kb on + strandat 320.384 kb on - strandat 320.384 kb on - strandat 320.485 kb on + strand, within Ga0059261_0336at 320.485 kb on + strand, within Ga0059261_0336at 320.486 kb on - strand, within Ga0059261_0336at 320.486 kb on - strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.623 kb on + strand, within Ga0059261_0336at 320.624 kb on - strandat 320.624 kb on - strand, within Ga0059261_0336at 320.668 kb on + strand, within Ga0059261_0336at 320.669 kb on - strand, within Ga0059261_0336at 320.773 kb on - strand, within Ga0059261_0336at 320.776 kb on + strand, within Ga0059261_0336at 320.776 kb on + strand, within Ga0059261_0336at 320.777 kb on - strand, within Ga0059261_0336at 320.777 kb on - strand, within Ga0059261_0336at 320.777 kb on - strand, within Ga0059261_0336at 320.777 kb on - strand, within Ga0059261_0336at 320.777 kb on - strand, within Ga0059261_0336at 320.952 kb on + strandat 320.952 kb on + strandat 320.952 kb on + strandat 320.952 kb on + strandat 320.952 kb on + strandat 320.953 kb on - strandat 320.953 kb on - strandat 320.953 kb on - strandat 320.953 kb on - strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.954 kb on + strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 320.955 kb on - strandat 321.359 kb on + strand, within Ga0059261_0337at 321.360 kb on - strand, within Ga0059261_0337at 321.668 kb on + strand, within Ga0059261_0337at 321.668 kb on + strand, within Ga0059261_0337at 321.669 kb on - strand, within Ga0059261_0337at 321.669 kb on - strand, within Ga0059261_0337at 321.669 kb on - strand, within Ga0059261_0337at 321.696 kb on + strand, within Ga0059261_0337at 321.696 kb on + strand, within Ga0059261_0337at 321.697 kb on - strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.959 kb on + strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.960 kb on - strand, within Ga0059261_0337at 321.996 kb on + strand, within Ga0059261_0337at 321.996 kb on + strand, within Ga0059261_0337at 321.997 kb on - strand, within Ga0059261_0337at 321.997 kb on - strand, within Ga0059261_0337at 321.998 kb on + strand, within Ga0059261_0337at 321.998 kb on + strand, within Ga0059261_0337at 321.999 kb on - strand, within Ga0059261_0337at 321.999 kb on - strand, within Ga0059261_0337at 322.043 kb on + strand, within Ga0059261_0337at 322.043 kb on + strand, within Ga0059261_0337at 322.043 kb on + strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.044 kb on - strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strandat 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.133 kb on + strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.134 kb on - strand, within Ga0059261_0337at 322.196 kb on + strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.197 kb on - strand, within Ga0059261_0337at 322.230 kb on + strand, within Ga0059261_0337at 322.479 kb on - strandat 322.631 kb on + strandat 322.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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319,948 + Ga0059261_0335 0.30 -3.2
319,948 + Ga0059261_0335 0.30 +2.9
319,948 + Ga0059261_0335 0.30 -1.6
319,948 + Ga0059261_0335 0.30 -1.2
319,948 + Ga0059261_0335 0.30 -0.7
319,949 - Ga0059261_0335 0.31 -1.0
319,949 - Ga0059261_0335 0.31 -0.2
319,949 - Ga0059261_0335 0.31 +1.3
319,949 - Ga0059261_0335 0.31 +0.2
320,145 + Ga0059261_0335 0.75 +0.5
320,145 + Ga0059261_0335 0.75 +0.6
320,145 + Ga0059261_0335 0.75 +0.5
320,145 + Ga0059261_0335 0.75 +0.1
320,146 - Ga0059261_0335 0.75 +1.4
320,356 + -0.6
320,356 + -1.0
320,356 + +1.4
320,357 - -1.0
320,361 + -1.2
320,361 + +0.9
320,361 + +0.5
320,361 + +0.4
320,361 + -0.6
320,361 + +1.3
320,361 + -1.7
320,361 + +5.3
320,362 - -2.1
320,362 - +0.3
320,362 - -0.1
320,383 + -0.9
320,383 + +1.9
320,383 + +0.5
320,383 + +0.2
320,383 + -0.1
320,384 - -0.6
320,384 - -1.2
320,485 + Ga0059261_0336 0.23 +0.1
320,485 + Ga0059261_0336 0.23 -0.6
320,486 - Ga0059261_0336 0.23 -1.0
320,486 - Ga0059261_0336 0.23 -0.8
320,623 + Ga0059261_0336 0.48 +2.7
320,623 + Ga0059261_0336 0.48 -1.0
320,623 + Ga0059261_0336 0.48 +2.1
320,623 + Ga0059261_0336 0.48 -0.4
320,623 + Ga0059261_0336 0.48 -0.0
320,623 + Ga0059261_0336 0.48 +0.6
320,623 + Ga0059261_0336 0.48 -0.1
320,623 + Ga0059261_0336 0.48 -0.5
320,624 - +4.1
320,624 - Ga0059261_0336 0.48 -2.3
320,668 + Ga0059261_0336 0.56 +0.9
320,669 - Ga0059261_0336 0.57 +0.1
320,773 - Ga0059261_0336 0.76 +0.5
320,776 + Ga0059261_0336 0.76 +0.2
320,776 + Ga0059261_0336 0.76 -1.5
320,777 - Ga0059261_0336 0.76 -1.8
320,777 - Ga0059261_0336 0.76 -1.2
320,777 - Ga0059261_0336 0.76 -1.0
320,777 - Ga0059261_0336 0.76 +0.5
320,777 - Ga0059261_0336 0.76 -1.8
320,952 + +0.2
320,952 + +0.5
320,952 + +0.5
320,952 + -0.2
320,952 + -0.8
320,953 - -0.6
320,953 - -0.3
320,953 - -0.2
320,953 - +0.2
320,954 + -2.0
320,954 + +2.1
320,954 + -1.3
320,954 + -1.0
320,954 + +0.7
320,954 + +0.9
320,954 + +0.2
320,954 + -0.0
320,954 + -0.8
320,954 + +1.2
320,954 + +0.6
320,954 + +0.1
320,954 + -1.0
320,954 + +2.4
320,955 - +1.3
320,955 - -0.9
320,955 - +5.3
320,955 - +0.6
320,955 - +0.9
320,955 - +0.1
320,955 - -0.1
320,955 - -1.9
321,359 + Ga0059261_0337 0.27 -2.6
321,360 - Ga0059261_0337 0.27 -2.0
321,668 + Ga0059261_0337 0.46 +2.3
321,668 + Ga0059261_0337 0.46 -0.3
321,669 - Ga0059261_0337 0.46 -0.7
321,669 - Ga0059261_0337 0.46 -1.2
321,669 - Ga0059261_0337 0.46 +0.5
321,696 + Ga0059261_0337 0.48 +0.2
321,696 + Ga0059261_0337 0.48 +1.5
321,697 - Ga0059261_0337 0.48 -2.8
321,959 + Ga0059261_0337 0.64 +2.2
321,959 + Ga0059261_0337 0.64 +0.3
321,959 + Ga0059261_0337 0.64 -1.0
321,959 + Ga0059261_0337 0.64 -1.8
321,959 + Ga0059261_0337 0.64 +0.5
321,959 + Ga0059261_0337 0.64 -1.4
321,959 + Ga0059261_0337 0.64 -1.6
321,959 + Ga0059261_0337 0.64 +3.1
321,959 + Ga0059261_0337 0.64 +0.5
321,960 - Ga0059261_0337 0.64 +1.6
321,960 - Ga0059261_0337 0.64 +2.3
321,960 - Ga0059261_0337 0.64 -2.4
321,960 - Ga0059261_0337 0.64 -0.8
321,960 - Ga0059261_0337 0.64 -1.2
321,960 - Ga0059261_0337 0.64 +3.3
321,960 - Ga0059261_0337 0.64 -0.8
321,960 - Ga0059261_0337 0.64 +0.1
321,996 + Ga0059261_0337 0.66 -0.7
321,996 + Ga0059261_0337 0.66 +1.8
321,997 - Ga0059261_0337 0.66 -1.1
321,997 - Ga0059261_0337 0.66 -0.9
321,998 + Ga0059261_0337 0.66 -0.9
321,998 + Ga0059261_0337 0.66 -1.4
321,999 - Ga0059261_0337 0.66 +0.7
321,999 - Ga0059261_0337 0.66 +0.9
322,043 + Ga0059261_0337 0.69 +0.3
322,043 + Ga0059261_0337 0.69 +3.1
322,043 + Ga0059261_0337 0.69 +1.0
322,044 - Ga0059261_0337 0.69 -2.1
322,044 - Ga0059261_0337 0.69 -1.4
322,044 - Ga0059261_0337 0.69 +1.2
322,044 - Ga0059261_0337 0.69 -0.3
322,044 - Ga0059261_0337 0.69 -0.1
322,044 - Ga0059261_0337 0.69 -0.5
322,044 - Ga0059261_0337 0.69 -0.8
322,044 - Ga0059261_0337 0.69 +0.1
322,133 + Ga0059261_0337 0.75 -2.8
322,133 + Ga0059261_0337 0.75 +2.5
322,133 + Ga0059261_0337 0.75 -1.8
322,133 + -0.7
322,133 + Ga0059261_0337 0.75 -1.2
322,133 + Ga0059261_0337 0.75 +3.2
322,133 + Ga0059261_0337 0.75 -1.0
322,133 + Ga0059261_0337 0.75 +0.6
322,133 + Ga0059261_0337 0.75 -0.3
322,134 - Ga0059261_0337 0.75 -0.7
322,134 - Ga0059261_0337 0.75 -0.5
322,134 - Ga0059261_0337 0.75 +1.4
322,134 - Ga0059261_0337 0.75 +2.1
322,134 - Ga0059261_0337 0.75 -0.8
322,134 - Ga0059261_0337 0.75 +2.6
322,196 + Ga0059261_0337 0.78 +1.1
322,197 - Ga0059261_0337 0.78 -1.6
322,197 - Ga0059261_0337 0.78 -0.3
322,197 - Ga0059261_0337 0.78 -2.5
322,197 - Ga0059261_0337 0.78 +0.8
322,197 - Ga0059261_0337 0.78 +0.4
322,197 - Ga0059261_0337 0.78 -0.3
322,230 + Ga0059261_0337 0.80 -1.7
322,479 - +0.0
322,631 + -0.1
322,632 - -0.1

Or see this region's nucleotide sequence