Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18030

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18020 and CSW01_18025 are separated by 36 nucleotidesCSW01_18025 and CSW01_18030 are separated by 36 nucleotidesCSW01_18030 and CSW01_18035 are separated by 363 nucleotides CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901 _18020 CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519 _18025 CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675 _18030 CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241 _18035 Position (kb) 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.567 kb on + strand, within CSW01_18020at 710.582 kb on - strand, within CSW01_18020at 710.605 kb on + strand, within CSW01_18020at 710.613 kb on - strand, within CSW01_18020at 710.682 kb on + strand, within CSW01_18020at 710.843 kb on + strandat 710.892 kb on + strandat 710.958 kb on - strandat 711.016 kb on - strand, within CSW01_18025at 711.018 kb on + strand, within CSW01_18025at 711.019 kb on + strand, within CSW01_18025at 711.026 kb on - strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.069 kb on + strand, within CSW01_18025at 711.074 kb on + strand, within CSW01_18025at 711.079 kb on + strand, within CSW01_18025at 711.082 kb on - strand, within CSW01_18025at 711.100 kb on + strand, within CSW01_18025at 711.124 kb on + strand, within CSW01_18025at 711.199 kb on + strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.260 kb on - strand, within CSW01_18025at 711.285 kb on + strand, within CSW01_18025at 711.372 kb on + strand, within CSW01_18025at 711.385 kb on + strand, within CSW01_18025at 711.587 kb on - strand, within CSW01_18030at 711.637 kb on - strand, within CSW01_18030at 711.639 kb on + strand, within CSW01_18030at 711.647 kb on - strand, within CSW01_18030at 711.683 kb on - strandat 711.683 kb on - strandat 711.710 kb on + strandat 711.737 kb on + strandat 711.761 kb on - strandat 711.767 kb on + strandat 711.817 kb on - strandat 712.284 kb on - strand, within CSW01_18035at 712.471 kb on - strand, within CSW01_18035at 712.500 kb on + strand, within CSW01_18035at 712.551 kb on + strand, within CSW01_18035at 712.559 kb on - strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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710,567 + CSW01_18020 0.74 -0.2
710,582 - CSW01_18020 0.75 +1.1
710,605 + CSW01_18020 0.77 -0.6
710,613 - CSW01_18020 0.77 +1.5
710,682 + CSW01_18020 0.83 +1.0
710,843 + -2.4
710,892 + +0.6
710,958 - -0.1
711,016 - CSW01_18025 0.13 -0.2
711,018 + CSW01_18025 0.14 -1.1
711,019 + CSW01_18025 0.14 +0.8
711,026 - CSW01_18025 0.15 +0.7
711,041 + CSW01_18025 0.18 +0.8
711,041 + CSW01_18025 0.18 +0.1
711,069 + CSW01_18025 0.23 -0.2
711,074 + CSW01_18025 0.23 +0.3
711,079 + CSW01_18025 0.24 +0.5
711,082 - CSW01_18025 0.25 -0.9
711,100 + CSW01_18025 0.28 +0.0
711,124 + CSW01_18025 0.32 +0.1
711,199 + CSW01_18025 0.45 +0.1
711,207 - CSW01_18025 0.46 -0.2
711,207 - CSW01_18025 0.46 -0.2
711,260 - CSW01_18025 0.55 -0.8
711,285 + CSW01_18025 0.60 +0.4
711,372 + CSW01_18025 0.75 -0.4
711,385 + CSW01_18025 0.77 -0.2
711,587 - CSW01_18030 0.26 -0.5
711,637 - CSW01_18030 0.68 -0.7
711,639 + CSW01_18030 0.69 -3.1
711,647 - CSW01_18030 0.76 +0.3
711,683 - -1.1
711,683 - -0.7
711,710 + -0.9
711,737 + -1.1
711,761 - +0.6
711,767 + +0.2
711,817 - +0.4
712,284 - CSW01_18035 0.20 +0.3
712,471 - CSW01_18035 0.36 -1.1
712,500 + CSW01_18035 0.38 +0.4
712,551 + CSW01_18035 0.43 +0.1
712,559 - CSW01_18035 0.43 -0.9
712,673 + CSW01_18035 0.53 +2.0
712,673 + CSW01_18035 0.53 -0.6
712,673 + CSW01_18035 0.53 +0.4
712,673 + CSW01_18035 0.53 +1.6
712,673 + CSW01_18035 0.53 -0.2

Or see this region's nucleotide sequence