Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17900

Experiment: LB_Aerobic_180MIN_ZN14A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17885 and CSW01_17890 overlap by 1 nucleotidesCSW01_17890 and CSW01_17895 are separated by 263 nucleotidesCSW01_17895 and CSW01_17900 are separated by 80 nucleotidesCSW01_17900 and CSW01_17905 are separated by 129 nucleotides CSW01_17885: CSW01_17885 - hypothetical protein, at 685,213 to 685,533 _17885 CSW01_17890: CSW01_17890 - hypothetical protein, at 685,533 to 685,682 _17890 CSW01_17895: CSW01_17895 - hypothetical protein, at 685,946 to 686,197 _17895 CSW01_17900: CSW01_17900 - glycerol kinase, at 686,278 to 687,795 _17900 CSW01_17905: CSW01_17905 - aquaporin family protein, at 687,925 to 688,779 _17905 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1 2at 685.313 kb on - strand, within CSW01_17885at 685.313 kb on - strand, within CSW01_17885at 685.326 kb on + strand, within CSW01_17885at 685.567 kb on - strand, within CSW01_17890at 685.755 kb on - strandat 685.826 kb on + strandat 685.826 kb on + strandat 685.863 kb on + strandat 685.909 kb on + strandat 685.909 kb on + strandat 685.918 kb on + strandat 685.927 kb on - strandat 686.089 kb on + strand, within CSW01_17895at 686.115 kb on + strand, within CSW01_17895at 686.115 kb on + strand, within CSW01_17895at 686.123 kb on - strand, within CSW01_17895at 686.301 kb on - strandat 686.301 kb on - strandat 686.303 kb on + strandat 686.308 kb on + strandat 686.313 kb on + strandat 686.316 kb on - strandat 686.316 kb on - strandat 686.332 kb on + strandat 686.332 kb on + strandat 686.340 kb on - strandat 686.379 kb on + strandat 686.379 kb on + strandat 686.379 kb on + strandat 686.387 kb on - strandat 686.418 kb on + strandat 686.470 kb on - strand, within CSW01_17900at 686.490 kb on + strand, within CSW01_17900at 686.525 kb on + strand, within CSW01_17900at 686.525 kb on + strand, within CSW01_17900at 686.533 kb on - strand, within CSW01_17900at 686.587 kb on - strand, within CSW01_17900at 686.723 kb on + strand, within CSW01_17900at 686.723 kb on + strand, within CSW01_17900at 686.737 kb on + strand, within CSW01_17900at 686.737 kb on + strand, within CSW01_17900at 686.760 kb on - strand, within CSW01_17900at 686.867 kb on + strand, within CSW01_17900at 686.867 kb on + strand, within CSW01_17900at 686.904 kb on - strand, within CSW01_17900at 686.915 kb on + strand, within CSW01_17900at 686.977 kb on - strand, within CSW01_17900at 687.048 kb on - strand, within CSW01_17900at 687.126 kb on - strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.230 kb on - strand, within CSW01_17900at 687.242 kb on + strand, within CSW01_17900at 687.244 kb on - strand, within CSW01_17900at 687.275 kb on - strand, within CSW01_17900at 687.331 kb on - strand, within CSW01_17900at 687.363 kb on - strand, within CSW01_17900at 687.380 kb on + strand, within CSW01_17900at 687.573 kb on + strand, within CSW01_17900at 687.615 kb on + strand, within CSW01_17900at 687.622 kb on + strand, within CSW01_17900at 687.623 kb on - strand, within CSW01_17900at 687.660 kb on - strandat 687.682 kb on - strandat 687.727 kb on + strandat 687.727 kb on + strandat 687.735 kb on - strandat 687.843 kb on + strandat 687.880 kb on - strandat 687.892 kb on - strandat 687.936 kb on + strandat 687.948 kb on + strandat 687.954 kb on - strandat 687.956 kb on - strandat 687.956 kb on - strandat 687.984 kb on - strandat 688.140 kb on + strand, within CSW01_17905at 688.165 kb on - strand, within CSW01_17905at 688.171 kb on - strand, within CSW01_17905at 688.173 kb on - strand, within CSW01_17905at 688.237 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.302 kb on - strand, within CSW01_17905at 688.372 kb on - strand, within CSW01_17905at 688.457 kb on + strand, within CSW01_17905at 688.465 kb on - strand, within CSW01_17905at 688.513 kb on - strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.576 kb on - strand, within CSW01_17905at 688.719 kb on - strandat 688.721 kb on + strandat 688.744 kb on - strandat 688.763 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
remove
685,313 - CSW01_17885 0.31 -0.3
685,313 - CSW01_17885 0.31 -0.6
685,326 + CSW01_17885 0.35 +0.2
685,567 - CSW01_17890 0.23 +0.7
685,755 - -1.1
685,826 + -1.7
685,826 + +0.3
685,863 + +0.7
685,909 + -0.6
685,909 + +1.2
685,918 + +0.6
685,927 - +0.3
686,089 + CSW01_17895 0.57 -0.2
686,115 + CSW01_17895 0.67 -0.2
686,115 + CSW01_17895 0.67 +0.3
686,123 - CSW01_17895 0.70 +0.3
686,301 - +0.6
686,301 - +0.0
686,303 + -1.4
686,308 + +0.6
686,313 + -0.5
686,316 - +0.6
686,316 - -0.2
686,332 + -0.9
686,332 + +0.4
686,340 - +0.5
686,379 + +0.4
686,379 + -2.6
686,379 + -0.8
686,387 - -0.4
686,418 + +0.8
686,470 - CSW01_17900 0.13 +1.4
686,490 + CSW01_17900 0.14 -1.2
686,525 + CSW01_17900 0.16 +0.1
686,525 + CSW01_17900 0.16 -0.1
686,533 - CSW01_17900 0.17 -2.0
686,587 - CSW01_17900 0.20 -1.2
686,723 + CSW01_17900 0.29 -0.1
686,723 + CSW01_17900 0.29 -0.1
686,737 + CSW01_17900 0.30 +0.4
686,737 + CSW01_17900 0.30 +0.4
686,760 - CSW01_17900 0.32 -2.0
686,867 + CSW01_17900 0.39 -2.0
686,867 + CSW01_17900 0.39 +1.0
686,904 - CSW01_17900 0.41 -1.7
686,915 + CSW01_17900 0.42 +0.9
686,977 - CSW01_17900 0.46 +0.1
687,048 - CSW01_17900 0.51 -0.6
687,126 - CSW01_17900 0.56 -0.5
687,222 + CSW01_17900 0.62 -1.6
687,222 + CSW01_17900 0.62 -0.7
687,222 + CSW01_17900 0.62 +1.0
687,230 - CSW01_17900 0.63 -0.0
687,242 + CSW01_17900 0.64 -0.5
687,244 - CSW01_17900 0.64 +0.4
687,275 - CSW01_17900 0.66 -0.9
687,331 - CSW01_17900 0.69 +0.1
687,363 - CSW01_17900 0.71 -0.2
687,380 + CSW01_17900 0.73 +2.0
687,573 + CSW01_17900 0.85 -1.0
687,615 + CSW01_17900 0.88 -0.3
687,622 + CSW01_17900 0.89 -0.2
687,623 - CSW01_17900 0.89 +0.5
687,660 - +0.9
687,682 - -1.0
687,727 + +0.6
687,727 + -0.3
687,735 - -0.0
687,843 + -0.1
687,880 - -0.6
687,892 - -0.4
687,936 + -0.5
687,948 + +0.4
687,954 - +0.7
687,956 - -0.3
687,956 - -0.3
687,984 - +2.4
688,140 + CSW01_17905 0.25 -0.1
688,165 - CSW01_17905 0.28 +0.7
688,171 - CSW01_17905 0.29 +0.4
688,173 - CSW01_17905 0.29 -1.2
688,237 + CSW01_17905 0.36 +0.8
688,294 + CSW01_17905 0.43 +1.4
688,294 + CSW01_17905 0.43 -0.6
688,294 + CSW01_17905 0.43 +0.8
688,302 - CSW01_17905 0.44 -0.6
688,372 - CSW01_17905 0.52 +0.0
688,457 + CSW01_17905 0.62 -0.6
688,465 - CSW01_17905 0.63 -0.4
688,513 - CSW01_17905 0.69 -0.5
688,568 + CSW01_17905 0.75 +0.4
688,568 + CSW01_17905 0.75 +0.1
688,576 - CSW01_17905 0.76 -0.5
688,719 - -1.4
688,721 + +1.4
688,744 - +1.0
688,763 - +1.4

Or see this region's nucleotide sequence