Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17860

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17855 and CSW01_17860 are separated by 17 nucleotidesCSW01_17860 and CSW01_17865 are separated by 211 nucleotides CSW01_17855: CSW01_17855 - autoinducer 2 sensor kinase/phosphatase LuxQ, at 678,655 to 681,228 _17855 CSW01_17860: CSW01_17860 - autoinducer 2-binding periplasmic protein LuxP, at 681,246 to 682,340 _17860 CSW01_17865: CSW01_17865 - conjugal transfer protein TraF, at 682,552 to 683,712 _17865 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2 3at 680.409 kb on + strand, within CSW01_17855at 680.419 kb on + strand, within CSW01_17855at 680.446 kb on + strand, within CSW01_17855at 680.492 kb on - strand, within CSW01_17855at 680.516 kb on - strand, within CSW01_17855at 680.523 kb on + strand, within CSW01_17855at 680.525 kb on + strand, within CSW01_17855at 680.528 kb on - strand, within CSW01_17855at 680.560 kb on - strand, within CSW01_17855at 680.569 kb on - strand, within CSW01_17855at 680.569 kb on - strand, within CSW01_17855at 680.592 kb on + strand, within CSW01_17855at 680.600 kb on - strand, within CSW01_17855at 680.608 kb on + strand, within CSW01_17855at 680.792 kb on - strand, within CSW01_17855at 680.996 kb on + strandat 681.074 kb on - strandat 681.076 kb on + strandat 681.086 kb on + strandat 681.157 kb on - strandat 681.195 kb on + strandat 681.203 kb on - strandat 681.239 kb on - strandat 681.339 kb on + strandat 681.483 kb on - strand, within CSW01_17860at 681.532 kb on + strand, within CSW01_17860at 681.563 kb on - strand, within CSW01_17860at 681.563 kb on - strand, within CSW01_17860at 681.594 kb on + strand, within CSW01_17860at 681.691 kb on - strand, within CSW01_17860at 681.719 kb on - strand, within CSW01_17860at 681.884 kb on + strand, within CSW01_17860at 681.894 kb on + strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 682.028 kb on - strand, within CSW01_17860at 682.060 kb on + strand, within CSW01_17860at 682.202 kb on + strand, within CSW01_17860at 682.275 kb on + strandat 682.301 kb on - strandat 682.489 kb on + strandat 682.497 kb on - strandat 682.695 kb on + strand, within CSW01_17865at 682.695 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.718 kb on + strand, within CSW01_17865at 682.726 kb on - strand, within CSW01_17865at 682.726 kb on - strand, within CSW01_17865at 682.743 kb on - strand, within CSW01_17865at 682.811 kb on - strand, within CSW01_17865at 682.854 kb on - strand, within CSW01_17865at 682.996 kb on - strand, within CSW01_17865at 683.058 kb on - strand, within CSW01_17865at 683.090 kb on - strand, within CSW01_17865at 683.162 kb on - strand, within CSW01_17865at 683.165 kb on + strand, within CSW01_17865at 683.213 kb on - strand, within CSW01_17865at 683.241 kb on - strand, within CSW01_17865at 683.261 kb on - strand, within CSW01_17865at 683.299 kb on - strand, within CSW01_17865at 683.310 kb on + strand, within CSW01_17865

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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680,409 + CSW01_17855 0.68 -0.2
680,419 + CSW01_17855 0.69 -0.5
680,446 + CSW01_17855 0.70 +0.1
680,492 - CSW01_17855 0.71 -0.6
680,516 - CSW01_17855 0.72 +0.4
680,523 + CSW01_17855 0.73 -0.4
680,525 + CSW01_17855 0.73 -0.2
680,528 - CSW01_17855 0.73 -0.1
680,560 - CSW01_17855 0.74 -0.8
680,569 - CSW01_17855 0.74 +0.1
680,569 - CSW01_17855 0.74 +0.0
680,592 + CSW01_17855 0.75 +0.6
680,600 - CSW01_17855 0.76 -0.6
680,608 + CSW01_17855 0.76 -0.4
680,792 - CSW01_17855 0.83 -0.2
680,996 + +1.3
681,074 - -1.2
681,076 + +0.1
681,086 + -0.1
681,157 - -0.2
681,195 + -1.9
681,203 - -0.2
681,239 - -0.4
681,339 + -0.6
681,483 - CSW01_17860 0.22 +0.9
681,532 + CSW01_17860 0.26 +0.4
681,563 - CSW01_17860 0.29 +1.1
681,563 - CSW01_17860 0.29 +0.5
681,594 + CSW01_17860 0.32 -1.0
681,691 - CSW01_17860 0.41 +0.0
681,719 - CSW01_17860 0.43 -0.4
681,884 + CSW01_17860 0.58 +3.2
681,894 + CSW01_17860 0.59 +0.7
681,902 - CSW01_17860 0.60 +1.0
681,902 - CSW01_17860 0.60 +0.2
682,028 - CSW01_17860 0.71 -1.8
682,060 + CSW01_17860 0.74 +0.8
682,202 + CSW01_17860 0.87 +0.2
682,275 + -0.2
682,301 - +0.5
682,489 + -0.3
682,497 - +0.3
682,695 + CSW01_17865 0.12 +0.6
682,695 + CSW01_17865 0.12 +0.5
682,706 + CSW01_17865 0.13 +0.8
682,706 + CSW01_17865 0.13 +0.5
682,706 + CSW01_17865 0.13 +1.4
682,706 + CSW01_17865 0.13 +0.2
682,706 + CSW01_17865 0.13 -2.0
682,706 + CSW01_17865 0.13 -0.6
682,706 + CSW01_17865 0.13 +0.1
682,706 + CSW01_17865 0.13 -0.6
682,706 + CSW01_17865 0.13 -0.4
682,714 - CSW01_17865 0.14 +1.0
682,714 - CSW01_17865 0.14 +0.1
682,714 - CSW01_17865 0.14 -0.5
682,714 - CSW01_17865 0.14 +0.2
682,714 - CSW01_17865 0.14 -1.4
682,714 - CSW01_17865 0.14 -1.1
682,714 - CSW01_17865 0.14 -0.5
682,714 - CSW01_17865 0.14 -0.2
682,714 - CSW01_17865 0.14 +0.1
682,718 + CSW01_17865 0.14 +0.5
682,726 - CSW01_17865 0.15 -0.2
682,726 - CSW01_17865 0.15 +0.1
682,743 - CSW01_17865 0.16 +0.3
682,811 - CSW01_17865 0.22 -0.0
682,854 - CSW01_17865 0.26 +0.4
682,996 - CSW01_17865 0.38 -0.4
683,058 - CSW01_17865 0.44 -0.1
683,090 - CSW01_17865 0.46 -1.0
683,162 - CSW01_17865 0.53 +0.4
683,165 + CSW01_17865 0.53 -0.7
683,213 - CSW01_17865 0.57 +1.6
683,241 - CSW01_17865 0.59 +2.0
683,261 - CSW01_17865 0.61 +0.6
683,299 - CSW01_17865 0.64 +0.2
683,310 + CSW01_17865 0.65 -0.5

Or see this region's nucleotide sequence