Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17815 and CSW01_17820 overlap by 8 nucleotides CSW01_17820 and CSW01_17825 are separated by 2 nucleotides CSW01_17825 and CSW01_17830 are separated by 698 nucleotides
CSW01_17815: CSW01_17815 - recombinase RecF, at 670,760 to 672,931
_17815
CSW01_17820: CSW01_17820 - hypothetical protein, at 672,924 to 673,547
_17820
CSW01_17825: CSW01_17825 - hypothetical protein, at 673,550 to 675,379
_17825
CSW01_17830: CSW01_17830 - hypothetical protein, at 676,078 to 676,383
_17830
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 672.639 kb on + strand, within CSW01_17815 at 672.639 kb on + strand, within CSW01_17815 at 672.647 kb on - strand, within CSW01_17815 at 672.647 kb on - strand, within CSW01_17815 at 672.658 kb on + strand, within CSW01_17815 at 672.666 kb on - strand, within CSW01_17815 at 672.700 kb on + strand, within CSW01_17815 at 672.737 kb on - strand at 672.999 kb on + strand, within CSW01_17820 at 672.999 kb on + strand, within CSW01_17820 at 672.999 kb on + strand, within CSW01_17820 at 673.142 kb on + strand, within CSW01_17820 at 673.181 kb on + strand, within CSW01_17820 at 673.276 kb on + strand, within CSW01_17820 at 673.276 kb on + strand, within CSW01_17820 at 673.276 kb on + strand, within CSW01_17820 at 673.284 kb on - strand, within CSW01_17820 at 673.486 kb on + strand at 673.486 kb on + strand at 673.515 kb on - strand at 673.517 kb on + strand at 673.525 kb on - strand at 673.581 kb on + strand at 673.755 kb on + strand, within CSW01_17825 at 673.773 kb on - strand, within CSW01_17825 at 673.800 kb on - strand, within CSW01_17825 at 673.800 kb on - strand, within CSW01_17825 at 673.800 kb on - strand, within CSW01_17825 at 673.800 kb on - strand, within CSW01_17825 at 674.151 kb on + strand, within CSW01_17825 at 674.159 kb on - strand, within CSW01_17825 at 674.168 kb on + strand, within CSW01_17825 at 674.168 kb on + strand, within CSW01_17825 at 674.180 kb on + strand, within CSW01_17825 at 674.184 kb on - strand, within CSW01_17825 at 674.392 kb on - strand, within CSW01_17825 at 674.392 kb on - strand, within CSW01_17825 at 674.472 kb on - strand, within CSW01_17825 at 674.534 kb on + strand, within CSW01_17825 at 674.555 kb on + strand, within CSW01_17825 at 674.563 kb on - strand, within CSW01_17825 at 674.707 kb on - strand, within CSW01_17825 at 674.707 kb on - strand, within CSW01_17825 at 674.771 kb on + strand, within CSW01_17825 at 674.806 kb on + strand, within CSW01_17825 at 674.838 kb on + strand, within CSW01_17825 at 674.848 kb on + strand, within CSW01_17825 at 674.853 kb on + strand, within CSW01_17825 at 674.931 kb on + strand, within CSW01_17825 at 674.933 kb on + strand, within CSW01_17825 at 674.999 kb on + strand, within CSW01_17825 at 675.200 kb on - strand at 675.305 kb on - strand at 675.349 kb on - strand at 675.600 kb on - strand at 675.635 kb on + strand at 675.834 kb on + strand at 675.834 kb on + strand at 675.834 kb on + strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.943 kb on + strand at 675.961 kb on + strand at 675.983 kb on - strand at 675.993 kb on + strand at 676.008 kb on - strand at 676.070 kb on + strand at 676.100 kb on - strand at 676.111 kb on + strand, within CSW01_17830 at 676.241 kb on + strand, within CSW01_17830 at 676.273 kb on + strand, within CSW01_17830 at 676.275 kb on - strand, within CSW01_17830
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 672,639 + CSW01_17815 0.87 +0.1 672,639 + CSW01_17815 0.87 +2.5 672,647 - CSW01_17815 0.87 +0.3 672,647 - CSW01_17815 0.87 +0.7 672,658 + CSW01_17815 0.87 +1.2 672,666 - CSW01_17815 0.88 +0.8 672,700 + CSW01_17815 0.89 -0.6 672,737 - +0.9 672,999 + CSW01_17820 0.12 +0.7 672,999 + CSW01_17820 0.12 +1.4 672,999 + CSW01_17820 0.12 +0.0 673,142 + CSW01_17820 0.35 -0.0 673,181 + CSW01_17820 0.41 +0.1 673,276 + CSW01_17820 0.56 +0.6 673,276 + CSW01_17820 0.56 -0.0 673,276 + CSW01_17820 0.56 +1.4 673,284 - CSW01_17820 0.58 -0.5 673,486 + -0.5 673,486 + -0.6 673,515 - +0.0 673,517 + -0.1 673,525 - +1.2 673,581 + -0.4 673,755 + CSW01_17825 0.11 -0.9 673,773 - CSW01_17825 0.12 +0.2 673,800 - CSW01_17825 0.14 +1.8 673,800 - CSW01_17825 0.14 +1.7 673,800 - CSW01_17825 0.14 -0.2 673,800 - CSW01_17825 0.14 +1.4 674,151 + CSW01_17825 0.33 -0.4 674,159 - CSW01_17825 0.33 +0.1 674,168 + CSW01_17825 0.34 +0.3 674,168 + CSW01_17825 0.34 -0.5 674,180 + CSW01_17825 0.34 +0.5 674,184 - CSW01_17825 0.35 +0.4 674,392 - CSW01_17825 0.46 +0.5 674,392 - CSW01_17825 0.46 -0.6 674,472 - CSW01_17825 0.50 +0.9 674,534 + CSW01_17825 0.54 +0.2 674,555 + CSW01_17825 0.55 +0.1 674,563 - CSW01_17825 0.55 -0.3 674,707 - CSW01_17825 0.63 -0.0 674,707 - CSW01_17825 0.63 -0.2 674,771 + CSW01_17825 0.67 -0.9 674,806 + CSW01_17825 0.69 -0.5 674,838 + CSW01_17825 0.70 -1.7 674,848 + CSW01_17825 0.71 -0.3 674,853 + CSW01_17825 0.71 +0.3 674,931 + CSW01_17825 0.75 -0.1 674,933 + CSW01_17825 0.76 -0.1 674,999 + CSW01_17825 0.79 -0.4 675,200 - +0.1 675,305 - -0.4 675,349 - +0.3 675,600 - -1.0 675,635 + -1.6 675,834 + +0.4 675,834 + +0.3 675,834 + +0.1 675,842 - +0.6 675,842 - -0.6 675,842 - +0.9 675,842 - -3.0 675,943 + -0.2 675,961 + -0.8 675,983 - +1.9 675,993 + +0.5 676,008 - +0.4 676,070 + +0.9 676,100 - -0.0 676,111 + CSW01_17830 0.11 -0.4 676,241 + CSW01_17830 0.53 +2.1 676,273 + CSW01_17830 0.64 +0.4 676,275 - CSW01_17830 0.64 +2.9
Or see this region's nucleotide sequence