Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17720

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17715 and CSW01_17720 are separated by 121 nucleotidesCSW01_17720 and CSW01_17725 are separated by 118 nucleotides CSW01_17715: CSW01_17715 - MFS transporter, at 647,923 to 649,302 _17715 CSW01_17720: CSW01_17720 - pyruvate kinase, at 649,424 to 650,884 _17720 CSW01_17725: CSW01_17725 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 651,003 to 653,957 _17725 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 648.489 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.535 kb on - strand, within CSW01_17715at 648.571 kb on + strand, within CSW01_17715at 648.648 kb on - strand, within CSW01_17715at 648.687 kb on + strand, within CSW01_17715at 648.695 kb on - strand, within CSW01_17715at 648.700 kb on + strand, within CSW01_17715at 648.744 kb on - strand, within CSW01_17715at 648.798 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.867 kb on + strand, within CSW01_17715at 648.875 kb on + strand, within CSW01_17715at 648.883 kb on - strand, within CSW01_17715at 648.924 kb on - strand, within CSW01_17715at 648.925 kb on - strand, within CSW01_17715at 648.964 kb on - strand, within CSW01_17715at 649.022 kb on + strand, within CSW01_17715at 649.022 kb on - strand, within CSW01_17715at 649.123 kb on - strand, within CSW01_17715at 649.185 kb on - strandat 649.188 kb on - strandat 649.228 kb on - strandat 649.457 kb on - strandat 649.667 kb on + strand, within CSW01_17720at 649.675 kb on - strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.800 kb on - strand, within CSW01_17720at 649.822 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 650.057 kb on - strand, within CSW01_17720at 650.120 kb on + strand, within CSW01_17720at 650.142 kb on + strand, within CSW01_17720at 650.150 kb on - strand, within CSW01_17720at 650.245 kb on + strand, within CSW01_17720at 650.247 kb on - strand, within CSW01_17720at 650.300 kb on + strand, within CSW01_17720at 650.357 kb on - strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.399 kb on + strand, within CSW01_17720at 650.444 kb on - strand, within CSW01_17720at 650.504 kb on + strand, within CSW01_17720at 650.643 kb on + strand, within CSW01_17720at 650.675 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.839 kb on - strandat 650.863 kb on + strandat 650.865 kb on + strandat 650.871 kb on - strandat 650.873 kb on + strandat 650.937 kb on - strandat 651.137 kb on - strandat 651.187 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.229 kb on + strandat 651.241 kb on + strandat 651.254 kb on - strandat 651.287 kb on + strandat 651.294 kb on + strandat 651.324 kb on + strand, within CSW01_17725at 651.367 kb on + strand, within CSW01_17725at 651.420 kb on + strand, within CSW01_17725at 651.435 kb on - strand, within CSW01_17725at 651.676 kb on + strand, within CSW01_17725at 651.676 kb on + strand, within CSW01_17725at 651.699 kb on - strand, within CSW01_17725at 651.712 kb on + strand, within CSW01_17725at 651.736 kb on + strand, within CSW01_17725at 651.744 kb on - strand, within CSW01_17725at 651.748 kb on + strand, within CSW01_17725at 651.869 kb on - strand, within CSW01_17725

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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648,489 - CSW01_17715 0.41 +0.5
648,489 - CSW01_17715 0.41 +1.2
648,535 - CSW01_17715 0.44 +1.3
648,571 + CSW01_17715 0.47 -0.2
648,648 - CSW01_17715 0.53 +0.7
648,687 + CSW01_17715 0.55 +0.8
648,695 - CSW01_17715 0.56 +0.8
648,700 + CSW01_17715 0.56 +0.5
648,744 - CSW01_17715 0.59 +0.4
648,798 + CSW01_17715 0.63 +0.3
648,855 + CSW01_17715 0.68 +0.2
648,855 + CSW01_17715 0.68 +0.2
648,863 - CSW01_17715 0.68 +0.7
648,863 - CSW01_17715 0.68 -2.2
648,867 + CSW01_17715 0.68 +0.8
648,875 + CSW01_17715 0.69 -1.4
648,883 - CSW01_17715 0.70 -0.1
648,924 - CSW01_17715 0.73 -1.5
648,925 - CSW01_17715 0.73 +0.3
648,964 - CSW01_17715 0.75 -0.7
649,022 + CSW01_17715 0.80 -1.4
649,022 - CSW01_17715 0.80 +1.3
649,123 - CSW01_17715 0.87 +0.5
649,185 - +0.3
649,188 - +0.9
649,228 - +1.6
649,457 - +0.1
649,667 + CSW01_17720 0.17 -0.5
649,675 - CSW01_17720 0.17 +1.1
649,742 + CSW01_17720 0.22 -0.8
649,742 + CSW01_17720 0.22 -0.2
649,742 + CSW01_17720 0.22 -1.5
649,742 + CSW01_17720 0.22 -0.7
649,750 - CSW01_17720 0.22 +0.3
649,750 - CSW01_17720 0.22 +0.2
649,750 - CSW01_17720 0.22 +0.3
649,750 - CSW01_17720 0.22 -2.1
649,750 - CSW01_17720 0.22 -0.7
649,750 - CSW01_17720 0.22 -0.7
649,750 - CSW01_17720 0.22 +1.2
649,750 - CSW01_17720 0.22 -0.0
649,752 + CSW01_17720 0.22 -2.7
649,752 + CSW01_17720 0.22 +0.2
649,752 + CSW01_17720 0.22 +2.2
649,760 - CSW01_17720 0.23 -0.3
649,760 - CSW01_17720 0.23 +0.6
649,800 - CSW01_17720 0.26 -0.9
649,822 + CSW01_17720 0.27 +0.9
649,853 + CSW01_17720 0.29 +0.3
649,853 + CSW01_17720 0.29 -0.1
650,057 - CSW01_17720 0.43 -0.1
650,120 + CSW01_17720 0.48 +0.2
650,142 + CSW01_17720 0.49 -0.9
650,150 - CSW01_17720 0.50 +0.3
650,245 + CSW01_17720 0.56 -0.3
650,247 - CSW01_17720 0.56 +0.0
650,300 + CSW01_17720 0.60 +0.2
650,357 - CSW01_17720 0.64 +2.3
650,389 + CSW01_17720 0.66 +0.3
650,389 + CSW01_17720 0.66 -0.6
650,389 + CSW01_17720 0.66 +0.2
650,389 + CSW01_17720 0.66 -0.0
650,389 + CSW01_17720 0.66 -0.2
650,389 + CSW01_17720 0.66 +0.1
650,397 - CSW01_17720 0.67 -0.2
650,397 - CSW01_17720 0.67 +0.5
650,397 - CSW01_17720 0.67 +0.2
650,399 + CSW01_17720 0.67 +0.9
650,444 - CSW01_17720 0.70 -0.0
650,504 + CSW01_17720 0.74 -0.0
650,643 + CSW01_17720 0.83 +0.1
650,675 + CSW01_17720 0.86 +1.2
650,685 + CSW01_17720 0.86 -0.3
650,685 + CSW01_17720 0.86 +0.3
650,685 + CSW01_17720 0.86 +0.5
650,685 + CSW01_17720 0.86 -1.3
650,685 + CSW01_17720 0.86 +0.5
650,839 - -0.1
650,863 + +0.3
650,865 + +0.9
650,871 - +0.2
650,873 + +0.1
650,937 - +2.3
651,137 - +1.0
651,187 + +1.8
651,217 + -0.3
651,217 + -0.5
651,217 + +0.4
651,217 + +0.2
651,217 + -1.2
651,217 + -1.7
651,217 + +0.7
651,217 + +0.8
651,217 + +0.3
651,217 + +0.0
651,217 + +0.1
651,217 + +0.8
651,217 + +0.2
651,217 + -0.5
651,217 + -0.3
651,217 + +0.5
651,217 + -0.2
651,217 + -0.5
651,217 + +0.3
651,217 + +0.7
651,225 - -0.1
651,225 - -1.4
651,225 - +0.0
651,225 - +1.3
651,225 - -1.4
651,225 - +0.3
651,225 - -0.9
651,225 - -0.5
651,225 - +0.5
651,225 - +0.1
651,225 - +0.8
651,225 - +1.1
651,225 - +1.0
651,225 - +0.3
651,229 + +0.1
651,241 + +0.6
651,254 - +0.1
651,287 + -1.0
651,294 + -0.8
651,324 + CSW01_17725 0.11 -0.0
651,367 + CSW01_17725 0.12 -0.2
651,420 + CSW01_17725 0.14 -0.4
651,435 - CSW01_17725 0.15 +0.4
651,676 + CSW01_17725 0.23 -0.5
651,676 + CSW01_17725 0.23 +1.4
651,699 - CSW01_17725 0.24 +0.5
651,712 + CSW01_17725 0.24 +0.7
651,736 + CSW01_17725 0.25 -0.1
651,744 - CSW01_17725 0.25 -1.1
651,748 + CSW01_17725 0.25 +0.6
651,869 - CSW01_17725 0.29 +0.7

Or see this region's nucleotide sequence