Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17520

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17510 and CSW01_17515 are separated by 80 nucleotidesCSW01_17515 and CSW01_17520 are separated by 146 nucleotidesCSW01_17520 and CSW01_17525 overlap by 60 nucleotidesCSW01_17525 and CSW01_17530 are separated by 264 nucleotides CSW01_17510: CSW01_17510 - peptidylprolyl isomerase, at 595,398 to 595,871 _17510 CSW01_17515: CSW01_17515 - beta-phosphoglucomutase family hydrolase, at 595,952 to 596,590 _17515 CSW01_17520: CSW01_17520 - methyl-accepting chemotaxis protein, at 596,737 to 598,500 _17520 CSW01_17525: CSW01_17525 - hypothetical protein, at 598,441 to 598,629 _17525 CSW01_17530: CSW01_17530 - anaerobic C4-dicarboxylate transporter DcuC, at 598,894 to 600,273 _17530 Position (kb) 596 597 598 599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 595.753 kb on - strand, within CSW01_17510at 595.812 kb on + strand, within CSW01_17510at 595.840 kb on + strandat 595.872 kb on + strandat 596.071 kb on + strand, within CSW01_17515at 596.073 kb on - strand, within CSW01_17515at 596.126 kb on - strand, within CSW01_17515at 596.248 kb on + strand, within CSW01_17515at 596.304 kb on - strand, within CSW01_17515at 596.412 kb on - strand, within CSW01_17515at 596.498 kb on - strand, within CSW01_17515at 596.544 kb on - strandat 596.654 kb on + strandat 596.684 kb on + strandat 596.807 kb on + strandat 597.008 kb on + strand, within CSW01_17520at 597.016 kb on - strand, within CSW01_17520at 597.016 kb on - strand, within CSW01_17520at 597.024 kb on + strand, within CSW01_17520at 597.024 kb on + strand, within CSW01_17520at 597.032 kb on - strand, within CSW01_17520at 597.051 kb on - strand, within CSW01_17520at 597.065 kb on + strand, within CSW01_17520at 597.073 kb on - strand, within CSW01_17520at 597.073 kb on - strand, within CSW01_17520at 597.101 kb on + strand, within CSW01_17520at 597.109 kb on - strand, within CSW01_17520at 597.261 kb on + strand, within CSW01_17520at 597.269 kb on - strand, within CSW01_17520at 597.322 kb on + strand, within CSW01_17520at 597.396 kb on - strand, within CSW01_17520at 597.656 kb on + strand, within CSW01_17520at 597.666 kb on + strand, within CSW01_17520at 597.671 kb on + strand, within CSW01_17520at 597.703 kb on - strand, within CSW01_17520at 597.751 kb on + strand, within CSW01_17520at 597.759 kb on - strand, within CSW01_17520at 597.773 kb on + strand, within CSW01_17520at 597.781 kb on - strand, within CSW01_17520at 597.819 kb on + strand, within CSW01_17520at 597.839 kb on + strand, within CSW01_17520at 597.907 kb on + strand, within CSW01_17520at 597.915 kb on - strand, within CSW01_17520at 597.917 kb on + strand, within CSW01_17520at 597.917 kb on + strand, within CSW01_17520at 597.923 kb on - strand, within CSW01_17520at 597.925 kb on - strand, within CSW01_17520at 597.925 kb on - strand, within CSW01_17520at 597.997 kb on + strand, within CSW01_17520at 597.997 kb on + strand, within CSW01_17520at 598.039 kb on - strand, within CSW01_17520at 598.111 kb on + strand, within CSW01_17520at 598.117 kb on + strand, within CSW01_17520at 598.119 kb on - strand, within CSW01_17520at 598.182 kb on - strand, within CSW01_17520at 598.220 kb on - strand, within CSW01_17520at 598.299 kb on - strand, within CSW01_17520at 598.330 kb on + strandat 598.330 kb on + strandat 598.330 kb on + strandat 598.338 kb on - strandat 598.340 kb on + strandat 598.349 kb on + strandat 598.377 kb on + strandat 598.418 kb on + strandat 598.426 kb on - strandat 598.426 kb on - strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.444 kb on + strandat 598.446 kb on - strandat 598.450 kb on + strandat 598.507 kb on - strand, within CSW01_17525at 598.645 kb on + strandat 598.863 kb on + strandat 598.930 kb on + strandat 598.930 kb on + strandat 598.966 kb on + strandat 598.968 kb on + strandat 598.968 kb on + strandat 598.968 kb on + strandat 598.974 kb on - strandat 598.992 kb on - strandat 599.002 kb on - strandat 599.073 kb on + strand, within CSW01_17530at 599.087 kb on + strand, within CSW01_17530at 599.098 kb on + strand, within CSW01_17530at 599.242 kb on + strand, within CSW01_17530at 599.250 kb on - strand, within CSW01_17530at 599.306 kb on + strand, within CSW01_17530at 599.306 kb on - strand, within CSW01_17530at 599.389 kb on + strand, within CSW01_17530

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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595,753 - CSW01_17510 0.75 -0.7
595,812 + CSW01_17510 0.87 +0.6
595,840 + +0.3
595,872 + -0.7
596,071 + CSW01_17515 0.19 +0.0
596,073 - CSW01_17515 0.19 +0.6
596,126 - CSW01_17515 0.27 +1.0
596,248 + CSW01_17515 0.46 +0.3
596,304 - CSW01_17515 0.55 +0.6
596,412 - CSW01_17515 0.72 -1.0
596,498 - CSW01_17515 0.85 +0.7
596,544 - +0.8
596,654 + -0.1
596,684 + +0.7
596,807 + +0.7
597,008 + CSW01_17520 0.15 +0.7
597,016 - CSW01_17520 0.16 +0.4
597,016 - CSW01_17520 0.16 +0.8
597,024 + CSW01_17520 0.16 +1.1
597,024 + CSW01_17520 0.16 +0.1
597,032 - CSW01_17520 0.17 +0.7
597,051 - CSW01_17520 0.18 +0.6
597,065 + CSW01_17520 0.19 -0.2
597,073 - CSW01_17520 0.19 -0.5
597,073 - CSW01_17520 0.19 +1.0
597,101 + CSW01_17520 0.21 -1.8
597,109 - CSW01_17520 0.21 +1.0
597,261 + CSW01_17520 0.30 +0.6
597,269 - CSW01_17520 0.30 -0.8
597,322 + CSW01_17520 0.33 +1.1
597,396 - CSW01_17520 0.37 +0.0
597,656 + CSW01_17520 0.52 +0.5
597,666 + CSW01_17520 0.53 +0.1
597,671 + CSW01_17520 0.53 +0.2
597,703 - CSW01_17520 0.55 +1.7
597,751 + CSW01_17520 0.57 +1.3
597,759 - CSW01_17520 0.58 +0.3
597,773 + CSW01_17520 0.59 -0.8
597,781 - CSW01_17520 0.59 -0.1
597,819 + CSW01_17520 0.61 +1.1
597,839 + CSW01_17520 0.62 +0.9
597,907 + CSW01_17520 0.66 +0.9
597,915 - CSW01_17520 0.67 -1.4
597,917 + CSW01_17520 0.67 +0.6
597,917 + CSW01_17520 0.67 +0.3
597,923 - CSW01_17520 0.67 +0.2
597,925 - CSW01_17520 0.67 -0.2
597,925 - CSW01_17520 0.67 +0.3
597,997 + CSW01_17520 0.71 +0.7
597,997 + CSW01_17520 0.71 +0.4
598,039 - CSW01_17520 0.74 +0.8
598,111 + CSW01_17520 0.78 +0.1
598,117 + CSW01_17520 0.78 +0.1
598,119 - CSW01_17520 0.78 -0.0
598,182 - CSW01_17520 0.82 +0.4
598,220 - CSW01_17520 0.84 -0.9
598,299 - CSW01_17520 0.89 -0.8
598,330 + +0.3
598,330 + +0.7
598,330 + +3.1
598,338 - +0.0
598,340 + -0.9
598,349 + -0.0
598,377 + +1.2
598,418 + +0.3
598,426 - +1.3
598,426 - +0.4
598,428 + -0.1
598,428 + +0.4
598,428 + +1.1
598,428 + -0.6
598,444 + +0.8
598,446 - +0.9
598,450 + -0.1
598,507 - CSW01_17525 0.35 -0.5
598,645 + +0.1
598,863 + -0.1
598,930 + -0.1
598,930 + -0.2
598,966 + -1.3
598,968 + +0.7
598,968 + -0.6
598,968 + -0.7
598,974 - +0.1
598,992 - +0.0
599,002 - -0.3
599,073 + CSW01_17530 0.13 -0.2
599,087 + CSW01_17530 0.14 +0.2
599,098 + CSW01_17530 0.15 -0.3
599,242 + CSW01_17530 0.25 +0.2
599,250 - CSW01_17530 0.26 +2.5
599,306 + CSW01_17530 0.30 +0.3
599,306 - CSW01_17530 0.30 -0.4
599,389 + CSW01_17530 0.36 -0.8

Or see this region's nucleotide sequence