Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17495 and CSW01_17500 are separated by 101 nucleotides CSW01_17500 and CSW01_17505 are separated by 185 nucleotides
CSW01_17495: CSW01_17495 - glycerol-3-phosphate dehydrogenase, at 591,126 to 592,664
_17495
CSW01_17500: CSW01_17500 - methyl-accepting chemotaxis protein, at 592,766 to 594,376
_17500
CSW01_17505: CSW01_17505 - hypothetical protein, at 594,562 to 595,185
_17505
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.784 kb on - strand, within CSW01_17495 at 591.812 kb on + strand, within CSW01_17495 at 591.812 kb on + strand, within CSW01_17495 at 591.817 kb on + strand, within CSW01_17495 at 591.887 kb on + strand, within CSW01_17495 at 591.887 kb on + strand, within CSW01_17495 at 591.889 kb on + strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.404 kb on + strand, within CSW01_17495 at 592.480 kb on + strand, within CSW01_17495 at 592.492 kb on + strand, within CSW01_17495 at 592.498 kb on - strand, within CSW01_17495 at 592.585 kb on + strand at 592.906 kb on + strand at 592.906 kb on + strand at 592.913 kb on + strand at 592.933 kb on + strand, within CSW01_17500 at 592.974 kb on - strand, within CSW01_17500 at 593.020 kb on + strand, within CSW01_17500 at 593.068 kb on - strand, within CSW01_17500 at 593.077 kb on + strand, within CSW01_17500 at 593.077 kb on + strand, within CSW01_17500 at 593.174 kb on + strand, within CSW01_17500 at 593.179 kb on + strand, within CSW01_17500 at 593.276 kb on - strand, within CSW01_17500 at 593.305 kb on + strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.323 kb on - strand, within CSW01_17500 at 593.465 kb on + strand, within CSW01_17500 at 593.473 kb on - strand, within CSW01_17500 at 593.473 kb on - strand, within CSW01_17500 at 593.555 kb on - strand, within CSW01_17500 at 593.611 kb on - strand, within CSW01_17500 at 593.707 kb on + strand, within CSW01_17500 at 593.719 kb on + strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.728 kb on + strand, within CSW01_17500 at 593.736 kb on - strand, within CSW01_17500 at 593.736 kb on - strand, within CSW01_17500 at 593.749 kb on - strand, within CSW01_17500 at 593.749 kb on - strand, within CSW01_17500 at 593.807 kb on + strand, within CSW01_17500 at 593.809 kb on + strand, within CSW01_17500 at 593.868 kb on + strand, within CSW01_17500 at 593.876 kb on - strand, within CSW01_17500 at 593.890 kb on - strand, within CSW01_17500 at 593.984 kb on - strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.008 kb on - strand, within CSW01_17500 at 594.106 kb on + strand, within CSW01_17500 at 594.113 kb on - strand, within CSW01_17500 at 594.113 kb on - strand, within CSW01_17500 at 594.114 kb on - strand, within CSW01_17500 at 594.248 kb on + strand at 594.322 kb on - strand at 594.407 kb on + strand at 594.415 kb on - strand at 594.456 kb on - strand at 594.591 kb on + strand at 594.694 kb on - strand, within CSW01_17505 at 594.753 kb on + strand, within CSW01_17505 at 594.799 kb on + strand, within CSW01_17505 at 594.898 kb on - strand, within CSW01_17505 at 595.005 kb on - strand, within CSW01_17505 at 595.011 kb on + strand, within CSW01_17505 at 595.014 kb on + strand, within CSW01_17505 at 595.037 kb on + strand, within CSW01_17505 at 595.045 kb on - strand, within CSW01_17505 at 595.052 kb on + strand, within CSW01_17505 at 595.126 kb on - strand at 595.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 591,784 - CSW01_17495 0.43 -2.1 591,812 + CSW01_17495 0.45 -1.4 591,812 + CSW01_17495 0.45 +1.8 591,817 + CSW01_17495 0.45 -2.8 591,887 + CSW01_17495 0.49 -0.1 591,887 + CSW01_17495 0.49 +0.0 591,889 + CSW01_17495 0.50 +0.6 591,895 - CSW01_17495 0.50 -0.8 591,895 - CSW01_17495 0.50 -0.3 591,895 - CSW01_17495 0.50 -0.1 592,153 + CSW01_17495 0.67 -0.9 592,153 + CSW01_17495 0.67 -1.1 592,153 + CSW01_17495 0.67 -0.7 592,404 + CSW01_17495 0.83 -0.9 592,480 + CSW01_17495 0.88 +0.3 592,492 + CSW01_17495 0.89 -0.9 592,498 - CSW01_17495 0.89 +0.3 592,585 + +0.1 592,906 + -0.3 592,906 + +0.5 592,913 + +0.6 592,933 + CSW01_17500 0.10 +0.5 592,974 - CSW01_17500 0.13 +0.9 593,020 + CSW01_17500 0.16 -0.6 593,068 - CSW01_17500 0.19 +0.1 593,077 + CSW01_17500 0.19 +0.5 593,077 + CSW01_17500 0.19 -1.1 593,174 + CSW01_17500 0.25 +0.2 593,179 + CSW01_17500 0.26 +0.3 593,276 - CSW01_17500 0.32 +0.3 593,305 + CSW01_17500 0.33 +0.0 593,313 - CSW01_17500 0.34 -1.7 593,313 - CSW01_17500 0.34 +0.1 593,313 - CSW01_17500 0.34 -0.8 593,323 - CSW01_17500 0.35 +0.2 593,465 + CSW01_17500 0.43 -0.3 593,473 - CSW01_17500 0.44 +1.0 593,473 - CSW01_17500 0.44 -2.3 593,555 - CSW01_17500 0.49 +1.0 593,611 - CSW01_17500 0.52 +0.2 593,707 + CSW01_17500 0.58 -0.3 593,719 + CSW01_17500 0.59 +0.2 593,727 - CSW01_17500 0.60 +0.3 593,727 - CSW01_17500 0.60 +1.4 593,727 - CSW01_17500 0.60 +0.8 593,728 + CSW01_17500 0.60 +1.0 593,736 - CSW01_17500 0.60 -0.6 593,736 - CSW01_17500 0.60 +0.9 593,749 - CSW01_17500 0.61 +0.5 593,749 - CSW01_17500 0.61 +0.6 593,807 + CSW01_17500 0.65 -0.1 593,809 + CSW01_17500 0.65 +2.3 593,868 + CSW01_17500 0.68 +0.1 593,876 - CSW01_17500 0.69 +0.3 593,890 - CSW01_17500 0.70 -0.0 593,984 - CSW01_17500 0.76 +0.5 594,000 + CSW01_17500 0.77 -0.5 594,000 + CSW01_17500 0.77 +0.8 594,000 + CSW01_17500 0.77 +0.7 594,008 - CSW01_17500 0.77 -0.6 594,106 + CSW01_17500 0.83 -0.3 594,113 - CSW01_17500 0.84 +1.0 594,113 - CSW01_17500 0.84 +0.7 594,114 - CSW01_17500 0.84 -0.1 594,248 + +1.9 594,322 - +0.2 594,407 + +1.0 594,415 - +1.3 594,456 - +0.1 594,591 + -1.5 594,694 - CSW01_17505 0.21 +0.9 594,753 + CSW01_17505 0.31 -0.3 594,799 + CSW01_17505 0.38 -0.7 594,898 - CSW01_17505 0.54 -0.6 595,005 - CSW01_17505 0.71 +0.7 595,011 + CSW01_17505 0.72 +0.6 595,014 + CSW01_17505 0.72 +1.2 595,037 + CSW01_17505 0.76 -0.9 595,045 - CSW01_17505 0.77 -0.7 595,052 + CSW01_17505 0.79 -2.0 595,126 - +0.2 595,359 - +2.1
Or see this region's nucleotide sequence