Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17245 and CSW01_17250 are separated by 6 nucleotides CSW01_17250 and CSW01_17255 are separated by 164 nucleotides CSW01_17255 and CSW01_17260 are separated by 60 nucleotides CSW01_17260 and CSW01_17265 are separated by 194 nucleotides
CSW01_17245: CSW01_17245 - aspartate aminotransferase family protein, at 540,790 to 542,187
_17245
CSW01_17250: CSW01_17250 - phosphonoacetaldehyde hydrolase, at 542,194 to 543,009
_17250
CSW01_17255: CSW01_17255 - nucleoside diphosphate kinase regulator, at 543,174 to 543,581
_17255
CSW01_17260: CSW01_17260 - noncanonical pyrimidine nucleotidase, YjjG family, at 543,642 to 544,316
_17260
CSW01_17265: CSW01_17265 - hypothetical protein, at 544,511 to 544,693
_17265
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 542.250 kb on - strand at 542.349 kb on + strand, within CSW01_17250 at 542.349 kb on + strand, within CSW01_17250 at 542.364 kb on + strand, within CSW01_17250 at 542.390 kb on + strand, within CSW01_17250 at 542.390 kb on + strand, within CSW01_17250 at 542.398 kb on - strand, within CSW01_17250 at 542.511 kb on - strand, within CSW01_17250 at 542.527 kb on - strand, within CSW01_17250 at 542.527 kb on - strand, within CSW01_17250 at 542.527 kb on - strand, within CSW01_17250 at 542.573 kb on + strand, within CSW01_17250 at 542.619 kb on + strand, within CSW01_17250 at 542.633 kb on - strand, within CSW01_17250 at 542.719 kb on + strand, within CSW01_17250 at 542.806 kb on + strand, within CSW01_17250 at 542.840 kb on + strand, within CSW01_17250 at 542.840 kb on + strand, within CSW01_17250 at 542.840 kb on + strand, within CSW01_17250 at 542.840 kb on + strand, within CSW01_17250 at 542.848 kb on - strand, within CSW01_17250 at 542.848 kb on - strand, within CSW01_17250 at 542.848 kb on - strand, within CSW01_17250 at 542.848 kb on - strand, within CSW01_17250 at 542.944 kb on + strand at 542.984 kb on + strand at 543.072 kb on + strand at 543.125 kb on + strand at 543.182 kb on + strand at 543.228 kb on - strand, within CSW01_17255 at 543.269 kb on - strand, within CSW01_17255 at 543.292 kb on + strand, within CSW01_17255 at 543.401 kb on - strand, within CSW01_17255 at 543.414 kb on + strand, within CSW01_17255 at 543.422 kb on - strand, within CSW01_17255 at 543.491 kb on + strand, within CSW01_17255 at 543.494 kb on - strand, within CSW01_17255 at 543.834 kb on + strand, within CSW01_17260 at 543.877 kb on - strand, within CSW01_17260 at 543.990 kb on + strand, within CSW01_17260 at 544.095 kb on - strand, within CSW01_17260 at 544.123 kb on + strand, within CSW01_17260 at 544.131 kb on - strand, within CSW01_17260 at 544.141 kb on - strand, within CSW01_17260 at 544.278 kb on + strand at 544.278 kb on + strand at 544.569 kb on - strand, within CSW01_17265
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 542,250 - +0.4 542,349 + CSW01_17250 0.19 +0.8 542,349 + CSW01_17250 0.19 -0.5 542,364 + CSW01_17250 0.21 +0.3 542,390 + CSW01_17250 0.24 -0.5 542,390 + CSW01_17250 0.24 -0.7 542,398 - CSW01_17250 0.25 -0.6 542,511 - CSW01_17250 0.39 +0.1 542,527 - CSW01_17250 0.41 +0.3 542,527 - CSW01_17250 0.41 -0.8 542,527 - CSW01_17250 0.41 +2.0 542,573 + CSW01_17250 0.46 +1.6 542,619 + CSW01_17250 0.52 +0.6 542,633 - CSW01_17250 0.54 +0.7 542,719 + CSW01_17250 0.64 +0.8 542,806 + CSW01_17250 0.75 +0.6 542,840 + CSW01_17250 0.79 -0.3 542,840 + CSW01_17250 0.79 -1.0 542,840 + CSW01_17250 0.79 -0.0 542,840 + CSW01_17250 0.79 +1.0 542,848 - CSW01_17250 0.80 +0.2 542,848 - CSW01_17250 0.80 +1.4 542,848 - CSW01_17250 0.80 -0.7 542,848 - CSW01_17250 0.80 -0.8 542,944 + +0.3 542,984 + +0.6 543,072 + +0.5 543,125 + -0.5 543,182 + +0.6 543,228 - CSW01_17255 0.13 -0.5 543,269 - CSW01_17255 0.23 -1.8 543,292 + CSW01_17255 0.29 +0.4 543,401 - CSW01_17255 0.56 -1.0 543,414 + CSW01_17255 0.59 -0.4 543,422 - CSW01_17255 0.61 -1.1 543,491 + CSW01_17255 0.78 +1.5 543,494 - CSW01_17255 0.78 -1.1 543,834 + CSW01_17260 0.28 -0.2 543,877 - CSW01_17260 0.35 +0.6 543,990 + CSW01_17260 0.52 -2.1 544,095 - CSW01_17260 0.67 -0.1 544,123 + CSW01_17260 0.71 +1.1 544,131 - CSW01_17260 0.72 -0.1 544,141 - CSW01_17260 0.74 -0.5 544,278 + +0.9 544,278 + -1.3 544,569 - CSW01_17265 0.32 -0.6
Or see this region's nucleotide sequence