Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17245

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17240 and CSW01_17245 are separated by 17 nucleotidesCSW01_17245 and CSW01_17250 are separated by 6 nucleotidesCSW01_17250 and CSW01_17255 are separated by 164 nucleotides CSW01_17240: CSW01_17240 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 539,669 to 540,772 _17240 CSW01_17245: CSW01_17245 - aspartate aminotransferase family protein, at 540,790 to 542,187 _17245 CSW01_17250: CSW01_17250 - phosphonoacetaldehyde hydrolase, at 542,194 to 543,009 _17250 CSW01_17255: CSW01_17255 - nucleoside diphosphate kinase regulator, at 543,174 to 543,581 _17255 Position (kb) 540 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 539.815 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.868 kb on + strand, within CSW01_17240at 539.873 kb on + strand, within CSW01_17240at 539.881 kb on - strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.942 kb on - strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.135 kb on + strand, within CSW01_17240at 540.212 kb on - strand, within CSW01_17240at 540.260 kb on - strand, within CSW01_17240at 540.292 kb on - strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.333 kb on + strand, within CSW01_17240at 540.402 kb on + strand, within CSW01_17240at 540.412 kb on - strand, within CSW01_17240at 540.421 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240at 540.510 kb on - strand, within CSW01_17240at 540.533 kb on - strand, within CSW01_17240at 540.776 kb on - strandat 540.816 kb on + strandat 540.829 kb on - strandat 540.886 kb on - strandat 540.954 kb on + strand, within CSW01_17245at 540.973 kb on + strand, within CSW01_17245at 540.973 kb on + strand, within CSW01_17245at 540.981 kb on - strand, within CSW01_17245at 540.983 kb on + strand, within CSW01_17245at 541.015 kb on + strand, within CSW01_17245at 541.040 kb on + strand, within CSW01_17245at 541.109 kb on + strand, within CSW01_17245at 541.117 kb on - strand, within CSW01_17245at 541.157 kb on + strand, within CSW01_17245at 541.228 kb on - strand, within CSW01_17245at 541.281 kb on + strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.446 kb on + strand, within CSW01_17245at 541.449 kb on - strand, within CSW01_17245at 541.531 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.659 kb on - strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.711 kb on - strand, within CSW01_17245at 541.717 kb on - strand, within CSW01_17245at 541.718 kb on - strand, within CSW01_17245at 541.934 kb on - strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.984 kb on - strand, within CSW01_17245at 542.012 kb on - strand, within CSW01_17245at 542.016 kb on + strand, within CSW01_17245at 542.121 kb on - strandat 542.139 kb on + strandat 542.156 kb on + strandat 542.250 kb on - strandat 542.349 kb on + strand, within CSW01_17250at 542.349 kb on + strand, within CSW01_17250at 542.364 kb on + strand, within CSW01_17250at 542.390 kb on + strand, within CSW01_17250at 542.390 kb on + strand, within CSW01_17250at 542.398 kb on - strand, within CSW01_17250at 542.511 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.573 kb on + strand, within CSW01_17250at 542.619 kb on + strand, within CSW01_17250at 542.633 kb on - strand, within CSW01_17250at 542.719 kb on + strand, within CSW01_17250at 542.806 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.944 kb on + strandat 542.984 kb on + strandat 543.072 kb on + strandat 543.125 kb on + strandat 543.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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539,815 + CSW01_17240 0.13 -0.4
539,849 + CSW01_17240 0.16 -2.8
539,849 + CSW01_17240 0.16 +0.0
539,868 + CSW01_17240 0.18 -0.3
539,873 + CSW01_17240 0.18 -0.5
539,881 - CSW01_17240 0.19 -0.1
539,907 + CSW01_17240 0.22 +0.9
539,907 + CSW01_17240 0.22 +0.7
539,942 - CSW01_17240 0.25 +0.1
540,016 + CSW01_17240 0.31 +1.3
540,016 + CSW01_17240 0.31 -0.1
540,016 + CSW01_17240 0.31 -0.7
540,024 - CSW01_17240 0.32 +0.6
540,024 - CSW01_17240 0.32 -0.3
540,024 - CSW01_17240 0.32 +0.2
540,024 - CSW01_17240 0.32 +1.3
540,135 + CSW01_17240 0.42 +0.8
540,212 - CSW01_17240 0.49 -0.2
540,260 - CSW01_17240 0.54 -0.5
540,292 - CSW01_17240 0.56 +0.7
540,297 + CSW01_17240 0.57 -1.1
540,297 + CSW01_17240 0.57 +1.4
540,297 + CSW01_17240 0.57 -0.0
540,305 - CSW01_17240 0.58 +0.2
540,305 - CSW01_17240 0.58 +0.4
540,305 - CSW01_17240 0.58 +0.7
540,333 + CSW01_17240 0.60 -0.2
540,402 + CSW01_17240 0.66 -0.1
540,412 - CSW01_17240 0.67 +1.1
540,421 + CSW01_17240 0.68 +0.0
540,423 + CSW01_17240 0.68 -0.1
540,423 + CSW01_17240 0.68 -1.7
540,510 - CSW01_17240 0.76 +0.4
540,533 - CSW01_17240 0.78 +1.0
540,776 - -1.2
540,816 + +0.3
540,829 - +0.5
540,886 - -0.3
540,954 + CSW01_17245 0.12 +0.1
540,973 + CSW01_17245 0.13 +0.3
540,973 + CSW01_17245 0.13 +1.9
540,981 - CSW01_17245 0.14 -0.8
540,983 + CSW01_17245 0.14 -0.0
541,015 + CSW01_17245 0.16 +2.5
541,040 + CSW01_17245 0.18 +0.0
541,109 + CSW01_17245 0.23 -0.5
541,117 - CSW01_17245 0.23 -0.0
541,157 + CSW01_17245 0.26 +1.5
541,228 - CSW01_17245 0.31 -0.3
541,281 + CSW01_17245 0.35 -1.0
541,365 - CSW01_17245 0.41 +0.1
541,365 - CSW01_17245 0.41 -0.6
541,365 - CSW01_17245 0.41 +0.6
541,446 + CSW01_17245 0.47 -0.5
541,449 - CSW01_17245 0.47 +1.3
541,531 - CSW01_17245 0.53 +0.0
541,570 - CSW01_17245 0.56 +0.0
541,570 - CSW01_17245 0.56 +0.5
541,659 - CSW01_17245 0.62 +0.6
541,696 + CSW01_17245 0.65 +0.6
541,696 + CSW01_17245 0.65 -0.1
541,704 - CSW01_17245 0.65 -0.5
541,704 - CSW01_17245 0.65 -1.3
541,704 - CSW01_17245 0.65 +1.3
541,704 - CSW01_17245 0.65 +2.1
541,711 - CSW01_17245 0.66 -0.5
541,717 - CSW01_17245 0.66 -2.7
541,718 - CSW01_17245 0.66 -2.0
541,934 - CSW01_17245 0.82 +0.6
541,953 + CSW01_17245 0.83 +1.7
541,953 + CSW01_17245 0.83 +0.5
541,953 + CSW01_17245 0.83 -0.2
541,984 - CSW01_17245 0.85 +1.9
542,012 - CSW01_17245 0.87 +0.7
542,016 + CSW01_17245 0.88 +0.3
542,121 - +0.7
542,139 + -0.1
542,156 + -0.2
542,250 - +0.4
542,349 + CSW01_17250 0.19 +0.8
542,349 + CSW01_17250 0.19 -0.5
542,364 + CSW01_17250 0.21 +0.3
542,390 + CSW01_17250 0.24 -0.5
542,390 + CSW01_17250 0.24 -0.7
542,398 - CSW01_17250 0.25 -0.6
542,511 - CSW01_17250 0.39 +0.1
542,527 - CSW01_17250 0.41 +0.3
542,527 - CSW01_17250 0.41 -0.8
542,527 - CSW01_17250 0.41 +2.0
542,573 + CSW01_17250 0.46 +1.6
542,619 + CSW01_17250 0.52 +0.6
542,633 - CSW01_17250 0.54 +0.7
542,719 + CSW01_17250 0.64 +0.8
542,806 + CSW01_17250 0.75 +0.6
542,840 + CSW01_17250 0.79 -0.3
542,840 + CSW01_17250 0.79 -1.0
542,840 + CSW01_17250 0.79 -0.0
542,840 + CSW01_17250 0.79 +1.0
542,848 - CSW01_17250 0.80 +0.2
542,848 - CSW01_17250 0.80 +1.4
542,848 - CSW01_17250 0.80 -0.7
542,848 - CSW01_17250 0.80 -0.8
542,944 + +0.3
542,984 + +0.6
543,072 + +0.5
543,125 + -0.5
543,182 + +0.6

Or see this region's nucleotide sequence