Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17210

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17205 and CSW01_17210 are separated by 218 nucleotidesCSW01_17210 and CSW01_17215 are separated by 99 nucleotides CSW01_17205: CSW01_17205 - YdcF family protein, at 530,896 to 531,849 _17205 CSW01_17210: CSW01_17210 - MFS transporter, at 532,068 to 533,540 _17210 CSW01_17215: CSW01_17215 - multidrug transporter, at 533,640 to 534,545 _17215 Position (kb) 532 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 531.082 kb on + strand, within CSW01_17205at 531.125 kb on + strand, within CSW01_17205at 531.129 kb on + strand, within CSW01_17205at 531.152 kb on + strand, within CSW01_17205at 531.160 kb on - strand, within CSW01_17205at 531.259 kb on - strand, within CSW01_17205at 531.359 kb on + strand, within CSW01_17205at 531.377 kb on + strand, within CSW01_17205at 531.496 kb on + strand, within CSW01_17205at 531.507 kb on + strand, within CSW01_17205at 531.517 kb on + strand, within CSW01_17205at 531.522 kb on + strand, within CSW01_17205at 531.522 kb on + strand, within CSW01_17205at 531.671 kb on + strand, within CSW01_17205at 531.671 kb on + strand, within CSW01_17205at 531.679 kb on - strand, within CSW01_17205at 531.681 kb on + strand, within CSW01_17205at 531.848 kb on - strandat 531.848 kb on - strandat 531.957 kb on - strandat 532.132 kb on + strandat 532.140 kb on - strandat 532.140 kb on - strandat 532.220 kb on + strand, within CSW01_17210at 532.242 kb on + strand, within CSW01_17210at 532.380 kb on + strand, within CSW01_17210at 532.388 kb on - strand, within CSW01_17210at 532.393 kb on - strand, within CSW01_17210at 532.599 kb on + strand, within CSW01_17210at 532.606 kb on + strand, within CSW01_17210at 532.614 kb on - strand, within CSW01_17210at 532.621 kb on + strand, within CSW01_17210at 532.661 kb on - strand, within CSW01_17210at 532.661 kb on - strand, within CSW01_17210at 532.676 kb on + strand, within CSW01_17210at 532.686 kb on + strand, within CSW01_17210at 532.760 kb on - strand, within CSW01_17210at 532.826 kb on + strand, within CSW01_17210at 532.874 kb on - strand, within CSW01_17210at 533.003 kb on + strand, within CSW01_17210at 533.005 kb on + strand, within CSW01_17210at 533.069 kb on + strand, within CSW01_17210at 533.241 kb on - strand, within CSW01_17210at 533.241 kb on - strand, within CSW01_17210at 533.245 kb on + strand, within CSW01_17210at 533.245 kb on + strand, within CSW01_17210at 533.253 kb on - strand, within CSW01_17210at 533.282 kb on - strand, within CSW01_17210at 533.339 kb on + strand, within CSW01_17210at 533.376 kb on - strand, within CSW01_17210at 533.421 kb on - strandat 533.421 kb on - strandat 533.455 kb on - strandat 533.460 kb on - strandat 533.462 kb on + strandat 533.470 kb on - strandat 533.472 kb on + strandat 533.480 kb on - strandat 533.502 kb on + strandat 533.502 kb on + strandat 533.558 kb on - strandat 533.567 kb on + strandat 533.895 kb on + strand, within CSW01_17215at 533.997 kb on + strand, within CSW01_17215at 534.187 kb on + strand, within CSW01_17215at 534.199 kb on - strand, within CSW01_17215at 534.206 kb on + strand, within CSW01_17215at 534.322 kb on - strand, within CSW01_17215at 534.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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531,082 + CSW01_17205 0.19 -2.0
531,125 + CSW01_17205 0.24 -0.2
531,129 + CSW01_17205 0.24 +0.4
531,152 + CSW01_17205 0.27 +1.6
531,160 - CSW01_17205 0.28 +1.0
531,259 - CSW01_17205 0.38 -1.1
531,359 + CSW01_17205 0.49 -0.5
531,377 + CSW01_17205 0.50 +0.4
531,496 + CSW01_17205 0.63 +1.1
531,507 + CSW01_17205 0.64 -0.4
531,517 + CSW01_17205 0.65 -0.3
531,522 + CSW01_17205 0.66 -1.4
531,522 + CSW01_17205 0.66 +0.3
531,671 + CSW01_17205 0.81 -0.7
531,671 + CSW01_17205 0.81 -1.4
531,679 - CSW01_17205 0.82 +0.9
531,681 + CSW01_17205 0.82 -0.5
531,848 - +0.4
531,848 - +0.8
531,957 - -0.5
532,132 + +1.3
532,140 - +0.1
532,140 - -0.1
532,220 + CSW01_17210 0.10 -0.7
532,242 + CSW01_17210 0.12 +0.3
532,380 + CSW01_17210 0.21 +0.4
532,388 - CSW01_17210 0.22 -0.4
532,393 - CSW01_17210 0.22 +0.4
532,599 + CSW01_17210 0.36 -0.1
532,606 + CSW01_17210 0.37 -1.8
532,614 - CSW01_17210 0.37 -0.4
532,621 + CSW01_17210 0.38 -0.7
532,661 - CSW01_17210 0.40 +0.3
532,661 - CSW01_17210 0.40 -2.0
532,676 + CSW01_17210 0.41 +1.1
532,686 + CSW01_17210 0.42 -0.3
532,760 - CSW01_17210 0.47 +0.2
532,826 + CSW01_17210 0.51 -0.4
532,874 - CSW01_17210 0.55 -0.3
533,003 + CSW01_17210 0.63 -0.9
533,005 + CSW01_17210 0.64 -0.8
533,069 + CSW01_17210 0.68 -0.4
533,241 - CSW01_17210 0.80 +0.5
533,241 - CSW01_17210 0.80 -0.2
533,245 + CSW01_17210 0.80 +0.5
533,245 + CSW01_17210 0.80 -0.6
533,253 - CSW01_17210 0.80 +0.1
533,282 - CSW01_17210 0.82 -0.1
533,339 + CSW01_17210 0.86 +0.3
533,376 - CSW01_17210 0.89 -0.4
533,421 - +1.2
533,421 - -1.4
533,455 - +2.3
533,460 - -0.1
533,462 + -0.3
533,470 - -0.6
533,472 + +0.9
533,480 - -1.3
533,502 + +0.0
533,502 + +1.2
533,558 - -0.2
533,567 + -0.4
533,895 + CSW01_17215 0.28 +0.1
533,997 + CSW01_17215 0.39 -0.1
534,187 + CSW01_17215 0.60 +0.0
534,199 - CSW01_17215 0.62 +0.1
534,206 + CSW01_17215 0.62 +0.1
534,322 - CSW01_17215 0.75 -0.2
534,509 - -0.5

Or see this region's nucleotide sequence