Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16285

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16270 and CSW01_16275 are separated by 42 nucleotidesCSW01_16275 and CSW01_16280 are separated by 33 nucleotidesCSW01_16280 and CSW01_16285 are separated by 66 nucleotidesCSW01_16285 and CSW01_16290 overlap by 4 nucleotidesCSW01_16290 and CSW01_16295 overlap by 25 nucleotidesCSW01_16295 and CSW01_16300 overlap by 84 nucleotidesCSW01_16300 and CSW01_16305 are separated by 175 nucleotides CSW01_16270: CSW01_16270 - DUF3709 domain-containing protein, at 386,587 to 386,910 _16270 CSW01_16275: CSW01_16275 - hypothetical protein, at 386,953 to 387,132 _16275 CSW01_16280: CSW01_16280 - DUF3465 domain-containing protein, at 387,166 to 387,591 _16280 CSW01_16285: CSW01_16285 - acetyltransferase, at 387,658 to 387,772 _16285 CSW01_16290: CSW01_16290 - DUF1289 domain-containing protein, at 387,769 to 388,002 _16290 CSW01_16295: CSW01_16295 - DUF1196 domain-containing protein, at 387,978 to 388,136 _16295 CSW01_16300: CSW01_16300 - transcriptional regulator, at 388,053 to 388,190 _16300 CSW01_16305: CSW01_16305 - hypothetical protein, at 388,366 to 388,791 _16305 Position (kb) 387 388Strain fitness (log2 ratio) -2 -1 0 1at 386.698 kb on - strand, within CSW01_16270at 386.698 kb on - strand, within CSW01_16270at 386.714 kb on + strand, within CSW01_16270at 386.722 kb on - strand, within CSW01_16270at 386.722 kb on - strand, within CSW01_16270at 387.022 kb on - strand, within CSW01_16275at 387.337 kb on + strand, within CSW01_16280at 387.755 kb on - strand, within CSW01_16285at 387.816 kb on + strand, within CSW01_16290

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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386,698 - CSW01_16270 0.34 -0.5
386,698 - CSW01_16270 0.34 -0.8
386,714 + CSW01_16270 0.39 +1.4
386,722 - CSW01_16270 0.42 +0.0
386,722 - CSW01_16270 0.42 -2.6
387,022 - CSW01_16275 0.38 +0.2
387,337 + CSW01_16280 0.40 -0.6
387,755 - CSW01_16285 0.84 -0.8
387,816 + CSW01_16290 0.20 +0.4

Or see this region's nucleotide sequence