Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15220

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15210 and CSW01_15215 are separated by 99 nucleotidesCSW01_15215 and CSW01_15220 are separated by 172 nucleotidesCSW01_15220 and CSW01_15225 are separated by 332 nucleotides CSW01_15210: CSW01_15210 - L-ascorbate 6-phosphate lactonase, at 268,323 to 269,390 _15210 CSW01_15215: CSW01_15215 - cytochrome b, at 269,490 to 270,023 _15215 CSW01_15220: CSW01_15220 - alpha-amylase, at 270,196 to 271,596 _15220 CSW01_15225: CSW01_15225 - antibiotic acetyltransferase, at 271,929 to 272,627 _15225 Position (kb) 270 271 272Strain fitness (log2 ratio) -1 0 1 2at 269.391 kb on + strandat 269.468 kb on - strandat 269.481 kb on - strandat 269.486 kb on + strandat 269.513 kb on - strandat 269.518 kb on + strandat 269.622 kb on - strand, within CSW01_15215at 269.658 kb on - strand, within CSW01_15215at 269.660 kb on + strand, within CSW01_15215at 269.675 kb on - strand, within CSW01_15215at 269.683 kb on - strand, within CSW01_15215at 269.867 kb on - strand, within CSW01_15215at 269.875 kb on + strand, within CSW01_15215at 269.875 kb on + strand, within CSW01_15215at 269.883 kb on - strand, within CSW01_15215at 269.930 kb on + strand, within CSW01_15215at 269.982 kb on - strandat 269.992 kb on - strandat 270.112 kb on + strandat 270.201 kb on - strandat 270.201 kb on - strandat 270.203 kb on + strandat 270.266 kb on - strandat 270.266 kb on - strandat 270.292 kb on + strandat 270.405 kb on - strand, within CSW01_15220at 270.555 kb on + strand, within CSW01_15220at 270.563 kb on - strand, within CSW01_15220at 270.711 kb on - strand, within CSW01_15220at 270.805 kb on - strand, within CSW01_15220at 270.807 kb on + strand, within CSW01_15220at 270.824 kb on + strand, within CSW01_15220at 270.825 kb on + strand, within CSW01_15220at 270.841 kb on + strand, within CSW01_15220at 270.841 kb on + strand, within CSW01_15220at 270.907 kb on + strand, within CSW01_15220at 270.915 kb on - strand, within CSW01_15220at 270.930 kb on - strand, within CSW01_15220at 270.930 kb on - strand, within CSW01_15220at 270.942 kb on - strand, within CSW01_15220at 270.992 kb on - strand, within CSW01_15220at 271.041 kb on - strand, within CSW01_15220at 271.041 kb on - strand, within CSW01_15220at 271.080 kb on + strand, within CSW01_15220at 271.085 kb on + strand, within CSW01_15220at 271.091 kb on + strand, within CSW01_15220at 271.104 kb on - strand, within CSW01_15220at 271.210 kb on + strand, within CSW01_15220at 271.210 kb on - strand, within CSW01_15220at 271.218 kb on - strand, within CSW01_15220at 271.223 kb on - strand, within CSW01_15220at 271.239 kb on + strand, within CSW01_15220at 271.359 kb on - strand, within CSW01_15220at 271.386 kb on - strand, within CSW01_15220at 271.473 kb on - strandat 271.488 kb on + strandat 271.606 kb on + strandat 271.684 kb on + strandat 271.692 kb on - strandat 271.692 kb on - strandat 271.692 kb on - strandat 271.694 kb on + strandat 271.694 kb on + strandat 271.694 kb on + strandat 271.702 kb on - strandat 271.702 kb on - strandat 271.797 kb on - strandat 271.801 kb on + strandat 271.820 kb on - strandat 271.955 kb on - strandat 272.049 kb on + strand, within CSW01_15225at 272.281 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.418 kb on + strand, within CSW01_15225at 272.505 kb on + strand, within CSW01_15225at 272.505 kb on - strand, within CSW01_15225

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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269,391 + +1.2
269,468 - +0.4
269,481 - -0.4
269,486 + +1.8
269,513 - -0.2
269,518 + -0.1
269,622 - CSW01_15215 0.25 -0.6
269,658 - CSW01_15215 0.31 -0.6
269,660 + CSW01_15215 0.32 -1.3
269,675 - CSW01_15215 0.35 +1.0
269,683 - CSW01_15215 0.36 +1.3
269,867 - CSW01_15215 0.71 -0.0
269,875 + CSW01_15215 0.72 +0.1
269,875 + CSW01_15215 0.72 +1.3
269,883 - CSW01_15215 0.74 -1.0
269,930 + CSW01_15215 0.82 +0.2
269,982 - +0.0
269,992 - +0.4
270,112 + -1.3
270,201 - -0.4
270,201 - +1.0
270,203 + +0.2
270,266 - -0.8
270,266 - -0.6
270,292 + +0.8
270,405 - CSW01_15220 0.15 +0.3
270,555 + CSW01_15220 0.26 +1.1
270,563 - CSW01_15220 0.26 +0.7
270,711 - CSW01_15220 0.37 +0.7
270,805 - CSW01_15220 0.43 -0.2
270,807 + CSW01_15220 0.44 -0.4
270,824 + CSW01_15220 0.45 +1.4
270,825 + CSW01_15220 0.45 +0.2
270,841 + CSW01_15220 0.46 +0.0
270,841 + CSW01_15220 0.46 -0.1
270,907 + CSW01_15220 0.51 -1.6
270,915 - CSW01_15220 0.51 -1.0
270,930 - CSW01_15220 0.52 -0.3
270,930 - CSW01_15220 0.52 +0.4
270,942 - CSW01_15220 0.53 +0.2
270,992 - CSW01_15220 0.57 -0.2
271,041 - CSW01_15220 0.60 +0.1
271,041 - CSW01_15220 0.60 -0.4
271,080 + CSW01_15220 0.63 -0.6
271,085 + CSW01_15220 0.63 +0.7
271,091 + CSW01_15220 0.64 -0.1
271,104 - CSW01_15220 0.65 +1.2
271,210 + CSW01_15220 0.72 -0.3
271,210 - CSW01_15220 0.72 -1.4
271,218 - CSW01_15220 0.73 -0.2
271,223 - CSW01_15220 0.73 +0.4
271,239 + CSW01_15220 0.74 +0.5
271,359 - CSW01_15220 0.83 +0.8
271,386 - CSW01_15220 0.85 -1.0
271,473 - +0.5
271,488 + +0.4
271,606 + +0.0
271,684 + -0.3
271,692 - -0.3
271,692 - +2.7
271,692 - -0.2
271,694 + -0.0
271,694 + -0.2
271,694 + +0.9
271,702 - -0.4
271,702 - +0.7
271,797 - +0.6
271,801 + +0.2
271,820 - -0.3
271,955 - -0.3
272,049 + CSW01_15225 0.17 -0.3
272,281 - CSW01_15225 0.50 -0.0
272,334 - CSW01_15225 0.58 +0.6
272,334 - CSW01_15225 0.58 +0.1
272,418 + CSW01_15225 0.70 +0.0
272,505 + CSW01_15225 0.82 -0.1
272,505 - CSW01_15225 0.82 +2.0

Or see this region's nucleotide sequence