Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14325 and CSW01_14330 are separated by 85 nucleotides CSW01_14330 and CSW01_14335 are separated by 529 nucleotides CSW01_14335 and CSW01_14340 are separated by 212 nucleotides
CSW01_14325: CSW01_14325 - peptidase, at 65,519 to 66,439
_14325
CSW01_14330: CSW01_14330 - hypothetical protein, at 66,525 to 66,773
_14330
CSW01_14335: CSW01_14335 - ATP-dependent helicase, at 67,303 to 68,661
_14335
CSW01_14340: CSW01_14340 - S9 family peptidase, at 68,874 to 70,871
_14340
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 66.317 kb on + strand, within CSW01_14325 at 66.416 kb on - strand at 66.418 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.699 kb on - strand, within CSW01_14330 at 66.710 kb on - strand, within CSW01_14330 at 66.788 kb on - strand at 66.788 kb on - strand at 66.811 kb on + strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 67.087 kb on - strand at 67.099 kb on - strand at 67.101 kb on + strand at 67.152 kb on - strand at 67.226 kb on + strand at 67.227 kb on + strand at 67.232 kb on - strand at 67.236 kb on + strand at 68.461 kb on + strand, within CSW01_14335 at 68.484 kb on + strand, within CSW01_14335 at 68.484 kb on + strand, within CSW01_14335 at 68.484 kb on + strand, within CSW01_14335 at 68.484 kb on + strand, within CSW01_14335 at 68.484 kb on + strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.492 kb on - strand, within CSW01_14335 at 68.670 kb on + strand at 68.676 kb on - strand at 68.676 kb on - strand at 68.678 kb on - strand at 68.680 kb on + strand at 68.882 kb on + strand at 68.882 kb on + strand at 68.990 kb on + strand at 69.056 kb on - strand at 69.497 kb on + strand, within CSW01_14340 at 69.629 kb on + strand, within CSW01_14340
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 66,317 + CSW01_14325 0.87 +0.2 66,416 - +0.7 66,418 + -0.5 66,532 + +0.9 66,532 + -0.0 66,532 + -0.8 66,532 + +0.7 66,532 + -0.5 66,532 + +0.9 66,532 + -0.1 66,532 + -1.7 66,532 + -0.5 66,532 + +1.0 66,532 + +0.1 66,532 + +0.2 66,532 + -0.7 66,532 + -0.0 66,532 + -0.9 66,532 + -1.0 66,532 + +0.5 66,532 + -0.6 66,532 + +0.6 66,532 + +0.9 66,540 - +0.2 66,540 - -0.1 66,540 - +0.2 66,540 - -0.5 66,540 - -0.1 66,540 - +0.2 66,540 - +0.2 66,540 - -0.1 66,540 - -0.7 66,699 - CSW01_14330 0.70 -0.3 66,710 - CSW01_14330 0.74 -0.6 66,788 - +0.5 66,788 - +0.3 66,811 + -0.3 66,819 - +0.5 66,819 - -0.9 66,819 - -1.0 66,819 - -1.2 66,819 - -0.4 67,087 - +3.1 67,099 - +0.5 67,101 + -0.2 67,152 - +1.3 67,226 + +0.5 67,227 + +2.5 67,232 - -0.4 67,236 + -0.7 68,461 + CSW01_14335 0.85 +0.9 68,484 + CSW01_14335 0.87 -1.1 68,484 + CSW01_14335 0.87 +0.3 68,484 + CSW01_14335 0.87 +1.8 68,484 + CSW01_14335 0.87 +1.3 68,484 + CSW01_14335 0.87 -1.1 68,492 - CSW01_14335 0.87 -0.2 68,492 - CSW01_14335 0.87 -0.6 68,492 - CSW01_14335 0.87 +0.5 68,492 - CSW01_14335 0.87 -0.1 68,492 - CSW01_14335 0.87 +0.5 68,492 - CSW01_14335 0.87 -3.5 68,670 + -0.5 68,676 - +0.0 68,676 - -1.7 68,678 - +0.2 68,680 + -0.6 68,882 + -0.1 68,882 + -0.2 68,990 + +1.0 69,056 - -1.4 69,497 + CSW01_14340 0.31 -0.3 69,629 + CSW01_14340 0.38 -1.4
Or see this region's nucleotide sequence