Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14060

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14060 and CSW01_14065 are separated by 584 nucleotides CSW01_14060: CSW01_14060 - hypothetical protein, at 361 to 549 _14060 CSW01_14065: CSW01_14065 - DUF3346 domain-containing protein, at 1,134 to 3,110 _14065 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.339 kb on + strandat 0.495 kb on + strand, within CSW01_14060at 0.495 kb on + strand, within CSW01_14060at 0.503 kb on - strand, within CSW01_14060at 0.503 kb on - strand, within CSW01_14060at 0.510 kb on - strand, within CSW01_14060at 0.608 kb on + strandat 0.608 kb on + strandat 0.616 kb on - strandat 0.616 kb on - strandat 0.616 kb on - strandat 0.616 kb on - strandat 0.616 kb on - strandat 0.698 kb on + strandat 0.723 kb on - strandat 0.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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339 + -1.9
495 + CSW01_14060 0.71 +0.1
495 + CSW01_14060 0.71 -0.6
503 - CSW01_14060 0.75 +0.3
503 - CSW01_14060 0.75 -1.1
510 - CSW01_14060 0.79 -0.2
608 + -0.4
608 + +0.3
616 - +0.3
616 - -0.3
616 - -0.2
616 - -0.6
616 - +0.2
698 + +0.0
723 - +0.2
753 + +0.6

Or see this region's nucleotide sequence