Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13650

Experiment: LB_Aerobic_180MIN_ZN14A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_180MIN_ZN14A
2,907,258	+		CSW01_13645	0.65	-0.1
2,907,295	-		CSW01_13645	0.67	+1.5
2,907,334	+		CSW01_13645	0.69	+0.8
2,907,336	+		CSW01_13645	0.70	+0.6
2,907,336	+		CSW01_13645	0.70	+0.1
2,907,336	+		CSW01_13645	0.70	+0.3
2,907,336	+		CSW01_13645	0.70	-0.6
2,907,344	-		CSW01_13645	0.70	+0.6
2,907,344	-		CSW01_13645	0.70	-0.4
2,907,344	-		CSW01_13645	0.70	-0.1
2,907,344	-		CSW01_13645	0.70	-0.5
2,907,344	-		CSW01_13645	0.70	+0.2
2,907,356	-		CSW01_13645	0.71	+0.6
2,907,361	-		CSW01_13645	0.71	+0.5
2,907,425	+		CSW01_13645	0.75	-0.1
2,907,433	-		CSW01_13645	0.75	-0.0
2,907,439	+		CSW01_13645	0.75	-0.7
2,907,447	-		CSW01_13645	0.76	+1.6
2,907,482	+		CSW01_13645	0.78	-0.7
2,907,492	+		CSW01_13645	0.79	-0.0
2,907,492	+		CSW01_13645	0.79	+0.3
2,907,492	+		CSW01_13645	0.79	-2.7
2,907,492	+		CSW01_13645	0.79	+0.2
2,907,500	-		CSW01_13645	0.79	-0.4
2,907,502	+		CSW01_13645	0.79	+0.2
2,907,535	-		CSW01_13645	0.81	-0.6
2,907,563	+		CSW01_13645	0.83	+0.1
2,907,578	-		CSW01_13645	0.83	-0.7
2,907,620	+		CSW01_13645	0.86	+0.6
2,907,708	+				-0.5
2,907,721	-				+0.9
2,907,726	-				-0.6
2,907,730	+				-0.2
2,907,746	-				+0.0
2,907,746	-				+0.2
2,907,793	+				+0.1
2,907,793	+				-0.5
2,907,793	+				-0.1
2,907,793	+				-0.2
2,907,801	-				+1.0
2,907,801	-				+1.1
2,907,813	-				-0.2
2,907,819	+				-0.7
2,907,870	+				-0.2
2,907,870	+				+0.6
2,907,893	-				+1.2
2,907,921	-				-1.5
2,907,997	+				+0.3
2,908,022	+				+0.4
2,908,049	-				+0.3
2,908,100	+				-0.5
2,908,100	+				-0.1
2,908,108	-				-0.2
2,908,108	-				+1.2
2,908,181	+				+0.4
2,908,277	-		CSW01_13650	0.12	-0.3
2,908,277	-		CSW01_13650	0.12	-0.2
2,908,322	+		CSW01_13650	0.29	+0.2
2,908,336	+		CSW01_13650	0.34	-0.5
2,908,391	+		CSW01_13650	0.55	-0.3
2,908,428	+		CSW01_13650	0.69	-0.1
2,908,506	+				+0.3
2,908,526	-				-1.2
2,908,562	+				+0.6
2,908,580	-				+0.3
2,908,603	+				+0.1
2,908,617	+				-0.2
2,908,636	+				-0.1
2,908,636	+				-1.3
2,908,636	+				-0.9
2,908,636	+				+0.8
2,908,636	+				+0.1
2,908,636	+				+0.2
2,908,636	+				+1.2
2,908,636	+				+0.9
2,908,636	+				-0.3
2,908,636	+				+0.3
2,908,636	+				-0.6
2,908,637	+				+0.9
2,908,642	-				-1.5
2,908,644	-				+0.5
2,908,644	-				-0.0
2,908,644	-				-0.4
2,908,644	-				+0.7
2,908,644	-				+0.6
2,908,644	-				-0.1
2,908,644	-				+0.5
2,908,645	-				-0.7
2,908,730	+		CSW01_13655	0.12	+0.3
2,908,742	+		CSW01_13655	0.13	-0.1
2,908,755	+		CSW01_13655	0.14	+0.2
2,908,763	-		CSW01_13655	0.14	+0.2
2,908,769	+		CSW01_13655	0.14	+0.3
2,908,769	+		CSW01_13655	0.14	-0.1
2,908,769	+		CSW01_13655	0.14	+0.6
2,908,769	+		CSW01_13655	0.14	+0.1
2,908,769	+		CSW01_13655	0.14	-0.7
2,908,777	-		CSW01_13655	0.15	-0.6
2,908,777	-		CSW01_13655	0.15	-0.4
2,908,777	-		CSW01_13655	0.15	-0.3
2,908,777	-		CSW01_13655	0.15	-1.2
2,908,783	+		CSW01_13655	0.15	-0.9
2,908,804	-		CSW01_13655	0.17	-2.2
2,908,857	+		CSW01_13655	0.20	-0.9
2,908,857	+		CSW01_13655	0.20	-0.8
2,908,857	+		CSW01_13655	0.20	+0.2
2,908,857	+		CSW01_13655	0.20	-0.8
2,908,857	+		CSW01_13655	0.20	+2.3
2,908,857	+		CSW01_13655	0.20	-1.7
2,908,857	+		CSW01_13655	0.20	+0.1
2,908,857	+		CSW01_13655	0.20	+1.6
2,908,865	-		CSW01_13655	0.20	-0.2
2,908,865	-		CSW01_13655	0.20	+0.3
2,908,865	-		CSW01_13655	0.20	-0.3
2,908,892	-		CSW01_13655	0.22	-0.2
2,908,918	-		CSW01_13655	0.23	-0.9
2,908,953	-		CSW01_13655	0.25	-0.0
2,908,958	+		CSW01_13655	0.26	+0.4
2,908,958	+		CSW01_13655	0.26	-1.1
2,908,966	-		CSW01_13655	0.26	+0.6
2,908,966	-		CSW01_13655	0.26	-0.3
2,909,028	-		CSW01_13655	0.30	+1.1
2,909,028	-		CSW01_13655	0.30	+0.9
2,909,037	+		CSW01_13655	0.30	-0.4
2,909,038	-		CSW01_13655	0.30	-1.4
2,909,046	-		CSW01_13655	0.31	-0.1
2,909,059	+		CSW01_13655	0.32	-0.2
2,909,059	+		CSW01_13655	0.32	-1.9
2,909,059	+		CSW01_13655	0.32	+0.6
2,909,062	+		CSW01_13655	0.32	-0.2
2,909,066	+		CSW01_13655	0.32	+0.6
2,909,069	+		CSW01_13655	0.32	-0.2
2,909,071	+		CSW01_13655	0.32	+0.3
2,909,071	+		CSW01_13655	0.32	+0.6
2,909,071	+		CSW01_13655	0.32	+0.1
2,909,076	+		CSW01_13655	0.33	-1.2
2,909,079	-		CSW01_13655	0.33	-0.3
2,909,079	-		CSW01_13655	0.33	+1.3
2,909,088	+		CSW01_13655	0.33	-0.2
2,909,115	+		CSW01_13655	0.35	-2.7
2,909,123	-		CSW01_13655	0.35	+0.6
2,909,161	-		CSW01_13655	0.38	-0.2
2,909,207	+		CSW01_13655	0.40	+0.0
2,909,212	+		CSW01_13655	0.40	-0.5
2,909,215	-		CSW01_13655	0.41	+0.1
2,909,215	-		CSW01_13655	0.41	-0.2
2,909,215	-		CSW01_13655	0.41	-0.3
2,909,215	-		CSW01_13655	0.41	-0.3
2,909,220	-		CSW01_13655	0.41	-0.3
2,909,220	-		CSW01_13655	0.41	+0.5
2,909,236	-		CSW01_13655	0.42	+0.1
2,909,247	-		CSW01_13655	0.43	-0.5
2,909,263	+		CSW01_13655	0.43	+0.4
2,909,263	+		CSW01_13655	0.43	-0.1
2,909,278	+		CSW01_13655	0.44	+3.6
2,909,286	+		CSW01_13655	0.45	+0.2
2,909,289	+		CSW01_13655	0.45	-0.6
2,909,297	-		CSW01_13655	0.45	+0.5
2,909,299	+		CSW01_13655	0.46	+0.6
2,909,304	+		CSW01_13655	0.46	+0.6
2,909,307	-		CSW01_13655	0.46	+0.8
2,909,307	-		CSW01_13655	0.46	-1.1
2,909,322	+		CSW01_13655	0.47	+1.6
2,909,365	+		CSW01_13655	0.49	+0.2
2,909,373	-		CSW01_13655	0.50	-1.5
2,909,379	-		CSW01_13655	0.50	+0.2
2,909,391	+		CSW01_13655	0.51	+0.0
2,909,399	+		CSW01_13655	0.51	-0.9
2,909,399	+		CSW01_13655	0.51	+0.3
2,909,399	+		CSW01_13655	0.51	-0.3
2,909,399	+		CSW01_13655	0.51	-0.4
2,909,400	-		CSW01_13655	0.52	+0.3
2,909,407	-		CSW01_13655	0.52	+0.1
2,909,427	-		CSW01_13655	0.53	-0.4
2,909,456	+		CSW01_13655	0.55	-0.1
2,909,464	-		CSW01_13655	0.55	-0.9
2,909,469	-		CSW01_13655	0.56	+0.6