Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11660 and CSW01_11665 overlap by 1 nucleotides CSW01_11665 and CSW01_11670 overlap by 14 nucleotides CSW01_11670 and CSW01_11675 are separated by 5 nucleotides
CSW01_11660: CSW01_11660 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 2,478,184 to 2,478,816
_11660
CSW01_11665: CSW01_11665 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 2,478,816 to 2,479,589
_11665
CSW01_11670: CSW01_11670 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 2,479,576 to 2,480,823
_11670
CSW01_11675: CSW01_11675 - NADH:ubiquinone reductase (Na(+)-transporting) subunit A, at 2,480,829 to 2,482,169
_11675
Position (kb)
2479
2480
2481 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2478.959 kb on - strand, within CSW01_11665 at 2479.090 kb on - strand, within CSW01_11665 at 2479.730 kb on - strand, within CSW01_11670 at 2479.883 kb on + strand, within CSW01_11670 at 2480.230 kb on + strand, within CSW01_11670 at 2480.232 kb on - strand, within CSW01_11670 at 2480.384 kb on - strand, within CSW01_11670 at 2480.426 kb on - strand, within CSW01_11670 at 2480.558 kb on + strand, within CSW01_11670 at 2480.738 kb on + strand at 2480.746 kb on - strand at 2481.330 kb on + strand, within CSW01_11675 at 2481.595 kb on - strand, within CSW01_11675 at 2481.597 kb on + strand, within CSW01_11675
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 2,478,959 - CSW01_11665 0.18 -0.9 2,479,090 - CSW01_11665 0.35 -0.9 2,479,730 - CSW01_11670 0.12 -0.4 2,479,883 + CSW01_11670 0.25 +0.6 2,480,230 + CSW01_11670 0.52 -2.7 2,480,232 - CSW01_11670 0.53 +0.6 2,480,384 - CSW01_11670 0.65 +2.2 2,480,426 - CSW01_11670 0.68 -0.4 2,480,558 + CSW01_11670 0.79 +1.6 2,480,738 + +0.6 2,480,746 - -0.4 2,481,330 + CSW01_11675 0.37 +0.6 2,481,595 - CSW01_11675 0.57 -0.9 2,481,597 + CSW01_11675 0.57 +2.0
Or see this region's nucleotide sequence