Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09195

Experiment: LB_Aerobic_180MIN_ZN14A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_09185 and CSW01_09190 are separated by 15 nucleotidesCSW01_09190 and CSW01_09195 are separated by 31 nucleotidesCSW01_09195 and CSW01_09200 are separated by 14 nucleotides CSW01_09185: CSW01_09185 - tol-pal system protein YbgF, at 1,974,552 to 1,975,316 _09185 CSW01_09190: CSW01_09190 - peptidoglycan-associated lipoprotein, at 1,975,332 to 1,975,850 _09190 CSW01_09195: CSW01_09195 - protein TolB, at 1,975,882 to 1,977,234 _09195 CSW01_09200: CSW01_09200 - protein TolA, at 1,977,249 to 1,978,319 _09200 Position (kb) 1975 1976 1977 1978Strain fitness (log2 ratio) -1 0 1at 1975.022 kb on - strand, within CSW01_09185at 1975.204 kb on + strand, within CSW01_09185at 1975.338 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
remove
1,975,022 - CSW01_09185 0.61 -0.3
1,975,204 + CSW01_09185 0.85 -0.6
1,975,338 + +0.5

Or see this region's nucleotide sequence